Chromosome Segregation Smc Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Chromosome Segregation Smc Protein
  Conformer 1
(PDB)
1gxj (A)
  Conformer 2
(PDB)
1gxl (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 101 1.05   500 - 582   597 - 614
2 56 0.86   583 - 596   615 - 656

Sequence


           _______________________________________________________________________________________________________580____________59 
 1gxj(A) : ***********************GFSRAVRAVFEEKERFPGLVDVVSNLIEVDEKYSLAVSVLLGGTAQNIVVRNVDTAKAIVEFLKQNEAGRVTILPLDLIDGSFNRISGLENERGFVG 
         :                                                                                                                          
 1gxl(A) : KEKRLREIQFEKEMIERDMREYRGFSRAVRAVFEEKERFPGLVDVVSNLIEVDEKYSLAVSVLLGGTAQNIVVRNVDTAKAIVEFLKQNEAGRVTILPLDLIDGSFNRISGLENERGFVG 
           _______________________________________________________________________________________________________580____________59 

           5_______________613__________________________________________________________________                                    
 1gxj(A) : YAVDLVKFPSDLEVLGGFLFGNSVVVETLDDAIRMKKKYRLNTRIATLDGELISGRGAITGGRE*********************                                    
         :                                                                                                                          
 1gxl(A) : YAVDLVKFPSDLEVLGGFLFGNSVVVETLDDAIRMKKKYRLNTRIATLDGELISGRGAITGGREERSSNVFERRIKLKHLEQEME                                    
           5_______________613__________________________________________________________________                                    

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
27.3
Translation
(A)
-0.6
Closure
(%)
95.4
Bending Residues
( green )
  580 - 583
  595 - 600
  613 - 615
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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