Cpn60(groel)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Cpn60(groel)
  Conformer 1
(PDB)
1we3 (A)
  Conformer 2
(PDB)
1we3 (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 338 0.11   5 - 189   375 - 527
2 185 0.37   190 - 374

Sequence


           ________________________________________________________________________________________________________________________ 
 1we3(A) : AKILVFDEAARRALERGVNAVANAVKVTLGPRGRNVVLEKKFGSPTITKDGVTVAKEVELEDHLENIGAQLLKEVASKTNDVAGDGTTTATVLAQAIVREGLKNVAAGANPLALKRGIEK 
         :                                                                                                                          
 1we3(B) : AKILVFDEAARRALERGVNAVANAVKVTLGPRGRNVVLEKKFGSPTITKDGVTVAKEVELEDHLENIGAQLLKEVASKTNDVAGDGTTTATVLAQAIVREGLKNVAAGANPLALKRGIEK 
           ________________________________________________________________________________________________________________________ 

           _______________________________________________________________188______________________________________________________ 
 1we3(A) : AVEAAVEKIKALAIPVEDRKAIEEVATISANDPEVGKLIADAMEKVGKEGIITVEESKSLETELKFVEGYQFDKGYISPYFVTNPETMEAVLEDAFILIVEKKVSNVRELLPILEQVAQT 
         :                                                                                                                          
 1we3(B) : AVEAAVEKIKALAIPVEDRKAIEEVATISANDPEVGKLIADAMEKVGKEGIITVEESKSLETELKFVEGYQFDKGYISPYFVTNPETMEAVLEDAFILIVEKKVSNVRELLPILEQVAQT 
           _______________________________________________________________188______________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1we3(A) : GKPLLIIAEDVEGEALATLVVNKLRGTLSVAAVKAPGFGDRRKEMLKDIAAVTGGTVISEELGFKLENATLSMLGRAERVRITKDETTIVGGKGKKEDIEARINGIKKELETTDSEYARE 
         :                                                                                                                          
 1we3(B) : GKPLLIIAEDVEGEALATLVVNKLRGTLSVAAVKAPGFGDRRKEMLKDIAAVTGGTVISEELGFKLENATLSMLGRAERVRITKDETTIVGGKGKKEDIEARINGIKKELETTDSEYARE 
           ________________________________________________________________________________________________________________________ 

           ______371_______________________________________________________________________________________________________________ 
 1we3(A) : KLQERLAKLAGGVAVIRVGAATETELKEKKHRFEDALNATRAAVEEGIVPGGGVTLLRAISAVEELIKKLEGDEATGAKIVRRALEEPARQIAENAGYEGSVIVQQILAETKNPRYGFNA 
         :                                                                                                                          
 1we3(B) : KLQERLAKLAGGVAVIRVGAATETELKEKKHRFEDALNATRAAVEEGIVPGGGVTLLRAISAVEELIKKLEGDEATGAKIVRRALEEPARQIAENAGYEGSVIVQQILAETKNPRYGFNA 
           ______371_______________________________________________________________________________________________________________ 

           _______________________________________________                                                                          
 1we3(A) : ATGEFVDMVEAGIVDPAKVTRSALQNAASIGALILTTEAVVAEKPEK                                                                          
         :                                                                                                                          
 1we3(B) : ATGEFVDMVEAGIVDPAKVTRSALQNAASIGALILTTEAVVAEKPEK                                                                          
           _______________________________________________                                                                          

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
27.7
Translation
(A)
-0.8
Closure
(%)
24.2
Bending Residues
( green )
  188 - 192
  371 - 376
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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