Dtdp-Glucose Oxidoreductase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Dtdp-Glucose Oxidoreductase
  Conformer 1
(PDB)
1kc1 (A)
  Conformer 2
(PDB)
1kc3 (A)
  Window Length 11
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 225 0.41   6 - 154   184 - 224   249 - 283
2 59 0.68   155 - 183   225 - 248   284 - 289

Sequence


           ________________________________________________________________________________________________________________________ 
 1kc1(A) : MNILLFGKTGQVGWELQRSLAPVGNLIALDVHSKEFCGDFSNPKGVAETVRKLRPDVIVNAAAHTAVDKAESEPELAQLLNATSVEAIAKAANETGAWVVHYSTDYVFPGTGDIPWQETD 
         :                                                                                                                          
 1kc3(A) : MNILLFGKTGQVGWELQRSLAPVGNLIALDVHSKEFCGDFSNPKGVAETVRKLRPDVIVNAAAHTAVDKAESEPELAQLLNATSVEAIAKAANETGAWVVHYSTDYVFPGTGDIPWQETD 
           ________________________________________________________________________________________________________________________ 

           _______________________________154__________________________183____________________________________222__________________ 
 1kc1(A) : ATSPLNVYGKTKLAGEKALQDNCPKHLIFRTSWVYAGKGNNFAKTMLRLAKERQTLSVINDQYGAPTGAELLADCTAHAIRVALNKPEVAGLYHLVAGGTTTWHDYAALVFDEARKAGIT 
         :                                                                                                                          
 1kc3(A) : ATSPLNVYGKTKLAGEKALQDNCPKHLIFRTSWVYAGKGNNFAKTMLRLAKERQTLSVINDQYGAPTGAELLADCTAHAIRVALNKPEVAGLYHLVAGGTTTWHDYAALVFDEARKAGIT 
           _______________________________154__________________________183____________________________________222__________________ 

           _____248________________________________283_______________                                                               
 1kc1(A) : LALTELNAVPTSAYPTPASRPGNSRLNTEKFQRNFDLILPQWELGVKRMLTEMFTTTT                                                               
         :                                                                                                                          
 1kc3(A) : LALTELNAVPTSAYPTPASRPGNSRLNTEKFQRNFDLILPQWELGVKRMLTEMFTTTT                                                               
           _____248________________________________283_______________                                                               

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
4.4
Translation
(A)
0.2
Closure
(%)
100.0
Bending Residues
( green )
  154 - 155
  183 - 184
  222 - 225
  248 - 262
  283 - 284
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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