Dual Specificity Mitogen-Activated Protein Kinase Kinase 6

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Dual Specificity Mitogen-Activated Protein Kinase Kinase 6
  Conformer 1
(PDB)
3fme (A)
  Conformer 2
(PDB)
3enm (B)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 213 2.94   67 - 82   108 - 329
2 20 1.71   83 - 107

Sequence


           ___________________________________82______________________107__________________________________________________________ 
 3fme(A) : MEVKADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIR---nSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWICMELMDTSLDKFYKQVIDKGQTIPEDILGKIAVSIVKA 
         :                                                                                                                          
 3enm(B) : ***KADDLe----LGRGAYGVVEK-rHVPSGQI-aVKRIRATVNSQEQKRLL-dLDIS-rTVDCPFTVTFYGALFREGDVWICe--LdTSLDKFYKQVIDKGQTIPEDILGKIAVSIVKA 
           ___________________________________82______________________107__________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 3fme(A) : LEHLHSKLSVIHRDVKPSNVLINALGQVKMCDFa-------GCKPYMAPERINPELNQySVKSDIWSLGITMIELAILRFPYDSWGTPFQQLKQVVEEPSPQLPADKFSAEFVDFTSQCL 
         :                                                                                                                          
 3enm(B) : LEHLHSKLSVIHRDVKPSNVLINALGQVK-cDFGISGYLVDDVkPY-aPERINPELNQKsVKSDIWSLGIT-iELAILRFPYDSWGTPFQQLKQVVEEPSPQLPADKFSAEFVDFTSQCL 
           ________________________________________________________________________________________________________________________ 

           ______________________________________                                                                                   
 3fme(A) : KKNSKERPTYPELMQHPFFTLHESKGTDVASFVKLILG                                                                                   
         :                                                                                                                          
 3enm(B) : KKNSKERPTYPEL-qHPFFTLHESKGTDVASFVKLIL*                                                                                   
           ______________________________________                                                                                   

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
58.3
Translation
(A)
-3.5
Closure
(%)
96.2
Bending Residues
( green )
  82 - 83
  107 - 118
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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