Elongation Factor Tu

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Elongation Factor Tu
  Conformer 1
(PDB)
1exm (A)
  Conformer 2
(PDB)
2c77 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 222 1.0   11 - 214   329 - 334   343 - 347   349 - 349   378 - 379   394 - 397
2 171 1.14   215 - 328   335 - 342   348 - 348   350 - 377   380 - 393   398 - 403

Sequence


           ________________________________________________________________________________________________________________________ 
 1exm(A) : *GEFIRTKPHVNVGTIGHVDHGKTTLTAALTFVTAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHIL 
         :                                                                                                                          
 2c77(A) : KGEFIRTKPHVNVGTIGHVDHGKTTLTAALTYVTAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHIL 
           ________________________________________________________________________________________________________________________ 

           _________________________________________________________________________________________213____________________________ 
 1exm(A) : LARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGR 
         :                                                                                                                          
 2c77(A) : LARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGR 
           _________________________________________________________________________________________213____________________________ 

           ________________________________________________________________________________324_______________342___________________ 
 1exm(A) : IERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPGSITPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPGVEM 
         :                                                                                                                          
 2c77(A) : IERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPGSITPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPGVEM 
           ________________________________________________________________________________324_______________342___________________ 

           _____________377_____________393____________                                                                             
 1exm(A) : VMPGDNVTFTVELIKPVALEEGLRFAIREGGRTVGAGVVTKILE                                                                             
         :                                                                                                                          
 2c77(A) : VMPGDNVTFTVELIKPVALEEGLRFAIREGGRTVGAGVVTKILE                                                                             
           _____________377_____________393____________                                                                             

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
16.3
Translation
(A)
1.0
Closure
(%)
81.3
Bending Residues
( green )
  213 - 217
  324 - 337
  342 - 350
  377 - 380
  393 - 398
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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