Endo-1,4-Beta-Xylanase II

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Endo-1,4-Beta-Xylanase II
  Conformer 1
(PDB)
1xyo (A)
  Conformer 2
(PDB)
1ref (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 131 0.39   4 - 76   89 - 100   107 - 118   138 - 153   167 - 167   172 - 188
2 54 0.55   77 - 88   101 - 106   119 - 137   154 - 166   168 - 171

Sequence


           __________________________________________________________________________76__________88______96_______106_________118__ 
 1xyo(A) : XTIQPGTGYNNGYFYSYWNDGHGGVTYTNGPGGQFSVNWSNSGNFVGGKGWQPGTKNKVINFSGSYNPNGNSYLSVYGWSRNPLIEYYIVENFGTYNPSTGATKLGEVTSDGSVYDIYRT 
         :                                                                                                                          
 1ref(B) : *TIQPGTGYNNGYFYSYWNDGHGGVTYTNGPGGQFSVNWSNSGNFVGGKGWQPGTKNKVINFSGSYNPNGNSYLSVYGWSRNPLIEYYIVENFGTYNPSTGATKLGEVTSDGSVYDIYRT 
           __________________________________________________________________________76__________88______96_______106_________118__ 

           ______________137____________152___________166__171___________________                                                   
 1xyo(A) : QRVNQPSIIGTATFYQYWSVRRNHRSSGSVNTANHFNAWAQQGLTLGTMDYQIVAVEGYFSSGSASITVS                                                   
         :                                                                                                                          
 1ref(B) : QRVNQPSIIGTATFYQYWSVRRNHRSSGSVNTANHFNAWAQQGLTLGTMDYQIVAVEGYFSSGSASITVS                                                   
           ______________137____________152___________166__171___________________                                                   

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
5.3
Translation
(A)
-0.1
Closure
(%)
91.5
Bending Residues
( green )
  76 - 77
  88 - 89
  96 - 103
  106 - 107
  118 - 119
  137 - 138
  152 - 154
  166 - 168
  171 - 172
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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