Endothia Aspartic Proteinase (Endothiapepsin) 3 (E.C.3.4.23.6)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Endothia Aspartic Proteinase (Endothiapepsin) 3 (E.C.3.4.23.6)
  Conformer 1
(PDB)
5er2 (E)
  Conformer 2
(PDB)
4ape  
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 199 0.48   0 - 29   33 - 181   212 - 215   219 - 219   271 - 274   302 - 305   311 - 311   315 - 318   323 - 323
2 127 0.49   30 - 32   182 - 211   216 - 218   220 - 270   275 - 301   306 - 310   312 - 314   319 - 322   324 - 324

Sequence


           ______________________________29_32_____________________________________________________________________________________ 
 5er2(E) : STGSATTTPIDSLDDAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTASEVDGQTIYTPSKSTTAKLLSGATWSISYGDGSSSSGDVYTDTVSVGGLTVTGQAVESAKKVSSSFTEDS 
         :                                                                                                                          
 4ape    : STGSATTTPIDSLDDAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTASEVDGQTIYTPSKSTTAKLLSGATWSISYGDGSSSSGDVYTDTVSVGGLTVTGQAVESAKKVSSSFTEDS 
           ______________________________29_32_____________________________________________________________________________________ 

           ______________________________________________________________181___________________________211_215_____________________ 
 5er2(E) : TIDGLLGLAFSTLNTVSPTQQKTFFDNAKASLDSPVFTADLGYHAPGTYNFGFIDTTAYTGSITYTAVSTKQGFWEWTSTGYAVGSGTFKSTSIDGIADTGTTLLYLPATVVSAYWAQVS 
         :                                                                                                                          
 4ape    : TIDGLLGLAFSTLNTVSPTQQKTFFDNAKASLDSPVFTADLGYHAPGTYNFGFIDTTAYTGSITYTAVSTKQGFWEWTSTGYAVGSGTFKSTSIDGIADTGTTLLYLPATVVSAYWAQVS 
           ______________________________________________________________181___________________________211_215_____________________ 

           ________________________________270_274______________________301_305__310_314______322____                               
 5er2(E) : GAKSSSSVGGYVFPCSATLPSFTFGVGSARIVIPGDYIDFGPISTGSSSCFGGIQSSAGIGINIFGDVALKAAFVVFNGATTPTLGFASK                               
         :                                                                                                                          
 4ape    : GAKSSSSVGGYVFPCSATLPSFTFGVGSARIVIPGDYIDFGPISTGSSSCFGGIQSSAGIGINIFGDVALKAAFVVFNGATTPTLGFASK                               
           ________________________________270_274______________________301_305__310_314______322____                               

Morph

Morph animation in progress.
Status: Initialising

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
3.9
Translation
(A)
-0.1
Closure
(%)
16.6
Bending Residues
( green )
  29 - 30
  32 - 33
  181 - 182
  211 - 212
  215 - 216
  218 - 220
  270 - 271
  274 - 282B
  301 - 302
  305 - 306
  310 - 312
  314 - 315
  317 - 319B
  322 - 324
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

Download and extract PyMOL PML script file Download