Fab Fragment, Antibody A5b7

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Fab Fragment, Antibody A5b7
  Conformer 1
(PDB)
1ad0 (A)
  Conformer 2
(PDB)
1hez (C)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 107 0.46   106 - 211
2 102 0.77   3 - 105

Sequence


           ______________________________________________________________________________________________________105_______________ 
 1ad0(A) : QTVLTQSPSSLSVSVGDRVTITCRASSSVT-YIHWYQQKPGLAPKSLIYATSNLASGVPSRFSGSGSGTDYTFTISSLQPEDIATYYCQHWSSKPPTFGQGTKVEVKRTVAAPSVFIFPP 
         :                                                                                                                          
 1hez(C) : DIQMTQSPSSLSASVGDRVTITCRTSQSISSYLNWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSYSTPRTFGQGTKVEIKRTVAAPSVFIFPP 
           ______________________________________________________________________________________________________105_______________ 

           ______________________________________________________________________________________________                           
 1ad0(A) : SDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC                           
         :                                                                                                                          
 1hez(C) : SDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC                           
           ______________________________________________________________________________________________                           

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
30.1
Translation
(A)
-0.1
Closure
(%)
87.8
Bending Residues
( green )
  105 - 106A
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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