Fatty Acid Binding Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Fatty Acid Binding Protein
  Conformer 1
(PDB)
1b56 (A)
  Conformer 2
(PDB)
4azm (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 74 1.57   59 - 132
2 54 0.69   5 - 58

Sequence


           ________________________________________________________57______________________________________________________________ 
 1b56(A) : ***TVQQLEGRWRLVDSKGFDEYMKELGVGIALRKMGAMAKPDCIITCDGKNLTIKTESTLKTTQFSCTLGEKFEETTADGRKTQTVCNFTDGALVQHQEWDGKESTITRKLKDGKLVVE 
         :                                                                                                                          
 4azm(A) : HMATVQQLEGRWRLVDSKGFDEYMKELGVGIALRKMGAMAKPDCIITCDGKNLTIKTESTLKTTQFSCTLGEKFEETTADGRKTQTVCNFTDGALVQHQEWDGKESTITRKLKDGKLVVE 
           ________________________________________________________57______________________________________________________________ 

           ________________                                                                                                         
 1b56(A) : CVMNNVTCTRIYEKVE                                                                                                         
         :                                                                                                                          
 4azm(A) : CVMNNVTCTRIYEKV*                                                                                                         
           ________________                                                                                                         

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
175.4
Translation
(A)
-1.0
Closure
(%)
97.8
Bending Residues
( green )
  57 - 64
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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