Gdp-D-Mannose-4,6-Dehydratase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Gdp-D-Mannose-4,6-Dehydratase
  Conformer 1
(PDB)
1n7g (A)
  Conformer 2
(PDB)
1n7g (D)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 235 0.8   30 - 224   242 - 252   255 - 281   319 - 333
2 74 0.56   225 - 241   253 - 254   282 - 309   334 - 360

Sequence


           ________________________________________________________________________________________________________________________ 
 1n7g(A) : RKIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYkALMKLHYADLTDASSLRRWIDVIKPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRT 
         :                                                                                                                          
 1n7g(D) : RKIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIY-IlMKLHYADLTDASSLRRWIDVIKPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRT 
           ________________________________________________________________________________________________________________________ 

           ___________________________________________________________________224______________241________252______________________ 
 1n7g(A) : VKYYQAGSSEMFGSTPPPQSETTPFHPRSPYAASKCAAHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRALGRIKVGLQTKLFLGNLQASRDWGFAGDYVEAMWLMLQQEKP 
         :                                                                                                                          
 1n7g(D) : VKYYQAGSSEMFGSTPPPQSETTPFHPRSPYAASKCAAHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRALGRIKVGLQTKLF-----aSRDWGFAGDYVEAMWLMLQQEKP 
           ___________________________________________________________________224______________241________252______________________ 

           ____281_____________________305_________________________333__________________________________                            
 1n7g(A) : DDYVVATEEGHTVEEFLDVSFGYLGLNWKDYVEIDQRYFRPAEVDNLQGDASKAKEVLGWKPQVGFEKLVKMMVDEDLELAKREKVLVDAGYM                            
         :                                                                                                                          
 1n7g(D) : DDYVVATEEGHTVEEFLDVSFGYLGLNWKDYVEID---------dNLQGDASKAKEVLGWKPQVGFEKLVKMMVDEDLELAKREKVLV*****                            
           ____281_____________________305_________________________333__________________________________                            

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
10.8
Translation
(A)
0.3
Closure
(%)
87.8
Bending Residues
( green )
  224 - 225
  241 - 244
  252 - 255
  281 - 283
  305 - 322
  333 - 334
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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