Glutamate Receptor 2

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glutamate Receptor 2
  Conformer 1
(PDB)
3bki (P)
  Conformer 2
(PDB)
1fto (A)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 140 0.43   8 - 107   202 - 202   220 - 258
2 111 0.21   108 - 201   203 - 219

Sequence


           ____________________________________________________________________________________________________107_________________ 
 3bki(P) : TVVVTTILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGTPIESA 
         :                                                                                                                          
 1fto(A) : TVVVTTILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGTPIESA 
           ____________________________________________________________________________________________________107_________________ 

           __________________________________________________________________________201_______________219_________________________ 
 3bki(P) : EDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQ 
         :                                                                                                                          
 1fto(A) : EDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQ 
           __________________________________________________________________________201_______________219_________________________ 

           _________________                                                                                                        
 3bki(P) : GLLDKLKNKWWYDKGEC                                                                                                        
         :                                                                                                                          
 1fto(A) : GLLDKLKNKWWYDKGEC                                                                                                        
           _________________                                                                                                        

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
3.4
Translation
(A)
0.2
Closure
(%)
99.6
Bending Residues
( green )
  107 - 108
  201 - 203
  219 - 220
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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