Elongation Factor Tu

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Elongation Factor Tu
  Conformer 1
(PDB)
1efc (A)
  Conformer 2
(PDB)
1exm (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 192 4.16   10 - 93   98 - 205
2 190 2.61   94 - 97   206 - 391

Sequence


           __________________________________________________________________________________________93____________________________ 
 1efc(A) : *****TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGA-ARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILL 
         :                                                                                                                          
 1exm(A) : GEFIRTKPHVNVGTIGHVDHGKTTLTAALTFVTAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILL 
           __________________________________________________________________________________________94____________________________ 

           ___________________________________________________________________________________________205__________________________ 
 1efc(A) : GRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALE----------GDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRV 
         :                                                                                                                          
 1exm(A) : ARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRI 
           ___________________________________________________________________________________________216__________________________ 

           ________________________________________________________________________________________________________________________ 
 1efc(A) : ERGIIKVGEEVEIVGIK-ETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMV 
         :                                                                                                                          
 1exm(A) : ERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPGSITPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPGVEMV 
           ________________________________________________________________________________________________________________________ 

           ___________________________________________                                                                              
 1efc(A) : MPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVLS                                                                              
         :                                                                                                                          
 1exm(A) : MPGDNVTFTVELIKPVALEEGLRFAIREGGRTVGAGVVTKILE                                                                              
           ___________________________________________                                                                              

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
76.2
Translation
(A)
0.7
Closure
(%)
91.5
Bending Residues
( green )
  93 - 98
  205 - 206
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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