Actin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Actin
  Conformer 1
(PDB) 		3hbt (A)
  Conformer 2
(PDB) 		8a2t (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 119 0.59   8 - 32   77 - 106   113 - 140   336 - 371
2 38 0.93   33 - 76   107 - 112
3 195 0.75   141 - 335

Sequence


           _________________________31______________________________________76___________________________106___112_________________ 
 3hbt(A) : TTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPR-------dSYVGDEAQSKRGILTLKYPIEgIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNV 
         :                                                                                                                          
 8a2t(A) : *TALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMqKDSYVGDEAQSKRGILTLKYPIEgIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNV 
           _________________________31______________________________________76___________________________106___112_________________ 

           ____136_________________________________________________________________________________________________________________ 
 3hbt(A) : PAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVIT 
         :                                                                                                                          
 8a2t(A) : PAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVIT 
           ____136_________________________________________________________________________________________________________________ 

           ___________________________________________________________________________________335__________________________________ 
 3hbt(A) : IGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSI 
         :                                                                                                                          
 8a2t(A) : IGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSI 
           ___________________________________________________________________________________335__________________________________ 

           ______                                                                                                                   
 3hbt(A) : VHRKCF                                                                                                                   
         :                                                                                                                          
 8a2t(A) : VHRKCF                                                                                                                   
           ______                                                                                                                   

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		11.4
Translation
(A) 		-0.3
Closure
(%) 		94.3
Bending Residues
( green ) 		  31 - 34
  76 - 77
  106 - 107
  112 - 117
Bending Region Analysis
Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( yellow ) 		3
Rotation Angle
(deg) 		15.6
Translation
(A) 		0.0
Closure
(%) 		25.2
Bending Residues
( green ) 		  136 - 143
  335 - 336
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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