Carboxyspermidine Dehydrogenase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Carboxyspermidine Dehydrogenase
  Conformer 1
(PDB) 		8h4z (A)
  Conformer 2
(PDB) 		8h52 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 334 1.2   4 - 173   183 - 253   300 - 397
2 55 0.58   174 - 182   254 - 299

Sequence


           ________________________________________________________________________________________________________________________ 
 8h4z(A) : MHTVLQIGAGGVGSVVAHKMGMNRDVFKNIILASRSLDKCYAIKESMLKKGLGEIGVEQVDADDTQALVALIQKYKPKVVINVALPYQDLTIMQACLETKTHYIDTANYE-----kFEYK 
         :                                                                                                                          
 8h52(A) : *HTVLQIGAGGVGSVVAHKMGMNRDVFKNIILASRSLDKCYAIKESMLKKGLGEIGVEQVDADDTQALVALIQKYKPKVVINVALPYQDLTIMQACLETKTHYIDTANYEHPDLAKFEYK 
           ________________________________________________________________________________________________________________________ 

           __________________________________________________173____180____________________________________________________________ 
 8h4z(A) : EQWAFDRAYKEARILGVLGAGFDPGVTNAYVAHAQRHHFDTIHTLDILDCNAGDHKRPFATNFNPEINLREVSSKGRYYENGKWIETKPLEIKQVWAYPQIGEMDSYLLYHEELESLVKN 
         :                                                                                                                          
 8h52(A) : EQWAFDRAYKEARILGVLGAGFDPGVTNAYVAHAQRHHFDTIHTLDILDCNAGDHKRPFATNFNPEINLREVSSKGRYYENGKWIETKPLEIKQVWAYPQIGEMDSYLLYHEELESLVKN 
           __________________________________________________173____180____________________________________________________________ 

           __________253___________________________________________299_____________________________________________________________ 
 8h4z(A) : IKGLRRARFFMTFSQNYLTHMKCLENVGMLGIKEIEHQGVKIVPIQFLKTLLPDPATLAKDTTGKTNIGCYMTGIKNNQDKTLYIYNVCDHKKCYEEVGSQAISYTTGVPAMCAAKMICN 
         :                                                                                                                          
 8h52(A) : IKGLRRARFFMTFSQNYLTHMKCLENVGMLGIKEIEHQGVKIVPIQFLKTLLPDPATLAKDTTGKTNIGCYMTGIKNNQDKTLYIYNVCDHKKCYEEVGSQAISYTTGVPAMCAAKMICN 
           __________253___________________________________________299_____________________________________________________________ 

           _______________________________________                                                                                  
 8h4z(A) : DTWSADHFRAGVFNIEELNTDPFMEELIKQGLPYEVIER                                                                                  
         :                                                                                                                          
 8h52(A) : DTWSADHFRAGVFNIEELNTDPFMEELIKQGLPYEVIER                                                                                  
           _______________________________________                                                                                  

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		10.2
Translation
(A) 		0.0
Closure
(%) 		99.4
Bending Residues
( green ) 		  173 - 174
  180 - 195
  253 - 254
  299 - 300
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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