Glycine Betaine/carnitine/choline-Binding Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glycine Betaine/carnitine/choline-Binding Protein
  Conformer 1
(PDB) 		3r6u (A)
  Conformer 2
(PDB) 		6eyg (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 158 0.42   14 - 116   152 - 160   223 - 249   254 - 256   266 - 281
2 110 0.25   117 - 151   161 - 222   250 - 253   257 - 265

Sequence


           _____________________________________________________________________________________________________________116________ 
 3r6u(A) : *******QTIKIGAQSMSESEIIASMLGQLIEHHTDLKTTTIKNLGSNAVQQQALMNGEIDIAATRYTGDALTGTLRMEPEKDPDKALALTQREFKKRYDLKWYDSYGFDNTYAFTVSKE 
         :                                                                                                                          
 6eyg(A) : GLSAAADQTIKIGAQSMSESEIIASMLGQLIEHHTDLKTTTIKNLGSNAVQQQALMNGEIDIAATRYTGTALTGTLRMEPEKDPDKALALTQREFKKRYDLKWYDSYGFDNTYAFTVSKE 
           _____________________________________________________________________________________________________________116________ 

           _______________________150_154_______________________________________________________________220________________________ 
 3r6u(A) : LADQYHLETVSDVKKWAPQLKLGVDNYWMKLKGNGYQDFTKTYGMTFGGTYPMQIGLVYDAVKSGKMDIVLAYSTDGRIKSYGLKMLKDDKQFFPPYDCSPVVPEKVLKEHPELEGIIKK 
         :                                                                                                                          
 6eyg(A) : LADQYHLETVSDVKKWAPQLKLGVDNYWMKLKGNGYQDFTKTYGMTFGGTYPMQIGLVYDAVKSGKMDIVLAYSTDGRIKSYGLKMLKDDKQFFPPYDCSPVVPEKVLKEHPELEGIIKK 
           _______________________150_154_______________________________________________________________220________________________ 

           __249_253_________265___________________                                                                                 
 3r6u(A) : MLGKIDTATMQELNYEVDGNLKEPSVVAKEYLEKHRYFE*                                                                                 
         :                                                                                                                          
 6eyg(A) : MLGKIDTATMQELNYEVDGNLKEPSVVAKEYLEKHRYFES                                                                                 
           __249_253_________265___________________                                                                                 

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		4.1
Translation
(A) 		-0.1
Closure
(%) 		55.7
Bending Residues
( green ) 		  116 - 117
  150 - 152
  154 - 161
  220 - 223
  249 - 250
  253 - 254
  256 - 257
  265 - 266
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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