Ferrienterobactin-Binding Periplasmic Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Ferrienterobactin-Binding Periplasmic Protein
  Conformer 1
(PDB) 		3tlk (A)
  Conformer 2
(PDB) 		2m6l (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 263 3.6   29 - 74   100 - 316
2 24 4.7   75 - 98

Sequence


           ______________________________________________74______________________98________________________________________________ 
 3tlk(A) : ADWPRQITDSRGTHTLESQPQRIVSTSVTLTGSLLAIDAPVIASGATTPNNRVADDQGFLRQWSKVAKERKLQRLYIGEPSAEAVAAQMPDLILISATGGDSALALYDQLSTIAPTLIIN 
         :                                                                                                                          
 2m6l(A) : ADWPRQITDSRGTHTLESQPQRIVSTSVTLTGSLLAIDAPVIASGATTPNNRVADDQGFLRQWSKVAKERKLQRLYIGEPSAEAVAAQMPDLILISATGGDSALALYDQLSTIAPTLIIN 
           ______________________________________________71______________________95________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 3tlk(A) : YDDKSWQSLLTQLGEITGHEKQAAERIAQFDKQLAAAKEQIKLPPQPVTAIVYTAAAHSANLWTPESAQGQMLEQLGFTLAKLPAGLNASQSQGKRHDIIQLGGENLAAGLNGESLFLFA 
         :                                                                                                                          
 2m6l(A) : YDDKSWQSLLTQLGEITGHEKQAAERIAQFDKQLAAAKEQIKLPPQPVTAIVYTAAAHSANLWTPESAQGQMLEQLGFTLAKLPAGLNASQSQGKRHDIIQLGGENLAAGLNGESLFLFA 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________                                                                 
 3tlk(A) : GDQKDADAIYANPLLAHLPAVQNKQVYALGTETFRLDYYSAMQVLDRLKALFLEHH                                                                 
         :                                                                                                                          
 2m6l(A) : GDQKDADAIYANPLLAHLPAVQNKQVYALGTETFRLDYYSAMQVLDRLKALF****                                                                 
           ________________________________________________________                                                                 

Morph
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		41.6
Translation
(A) 		-0.8
Closure
(%) 		28.5
Bending Residues
( green ) 		  74 - 75
  98 - 103
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

Chart image not calculated - the graph is too big to count connection types.

PyMOL Script

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