Gamma-Aminobutyric Acid Type B Receptor Subunit 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Gamma-Aminobutyric Acid Type B Receptor Subunit 1
  Conformer 1
(PDB) 		4mqe (A)
  Conformer 2
(PDB) 		4mr9 (A)
  Window Length 11
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 208 0.21   53 - 153   159 - 171   314 - 415
2 189 0.31   154 - 158   172 - 313   416 - 457

Sequence


           ______________________________________________________________________________________________________152___158________1 
 4mqe(A) : SERRAVYIGALFPMSGGWPGGQACQPAVEMALEDVNSRRDILPDYELKLIHHDSKCDPGQATKYLYELLYNDPIKIILMPGCSSVSTLVAEAARMWNLIVLSYGSSSPALSNRQRFPTFF 
         :                                                                                                                          
 4mr9(A) : SERRAVYIGALFPMSGGWPGGQACQPAVEMALEDVNSRRDILPDYELKLIHHDSKCDPGQATKYLYELLYNDPIKIILMPGCSSVSTLVAEAARMWNLIVLSYGSSSPALSNRQRFPTFF 
           ______________________________________________________________________________________________________152___158________1 

           69______________________________________________________________________________________________________________________ 
 4mqe(A) : RTHPSATLHNPTRVKLFEKWGWKKIATIQQTTEVFTSTLDDLEERVKEAGIEITFRQSFFSDPAVPVKNLKRQDARIIVGLFYETEARKVFCEVYKERLFGKKYVWFLIGWYADNWFKIY 
         :                                                                                                                          
 4mr9(A) : RTHPSATLHNPTRVKLFEKWGWKKIATIQQTTEVFTSTLDDLEERVKEAGIEITFRQSFFSDPAVPVKNLKRQDARIIVGLFYETEARKVFCEVYKERLFGKKYVWFLIGWYADNWFKIY 
           69______________________________________________________________________________________________________________________ 

           _______________________313__________________________________________________________________________________________414_ 
 4mqe(A) : DPSINCTVDEMTEAVEGHITTEIVMLNPANTRSISNMTSQEFVEKLTKRLKRHPEETGGFQEAPLAYDAIWALALALNKTSrLEDFNYNNQTITDQIYRAMNSSSFEGVSGHVVFDASGS 
         :                                                                                                                          
 4mr9(A) : DPSINCTVDEMTEAVEGHITTEIVMLNPANTRSISNMTSQEFVEKLTKRLKRHPEETGGFQEAPLAYDAIWALALALNKTSrLEDFNYNNQTITDQIYRAMNSSSFEGVSGHVVFDASGS 
           _______________________313__________________________________________________________________________________________414_ 

           _________________________________________________                                                                        
 4mqe(A) : RMAWTLIEQLQGGSYKKIGYYDSTKDDLSWSKTDKWIGGSPPADDYKDD                                                                        
         :                                                                                                                          
 4mr9(A) : RMAWTLIEQLQGGSYKKIGYYDSTKDDLSWSKTDKWIGGSPPADDYK**                                                                        
           _________________________________________________                                                                        

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		2.7
Translation
(A) 		0.2
Closure
(%) 		92.4
Bending Residues
( green ) 		  152 - 155
  158 - 159
  169 - 172
  313 - 314
  414 - 416
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

Download and extract PyMOL PML script file Download