Glutamate Receptor, Ionotropic Kainate 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glutamate Receptor, Ionotropic Kainate 1
  Conformer 1
(PDB) 		2f36 (A)
  Conformer 2
(PDB) 		3qlv (A)
  Window Length 9
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 83 13.74   14 - 88   135 - 140   142 - 143
2 43 10.26   89 - 100   141 - 141   144 - 175

Sequence


           ________________________________________________________________________________________________________________________ 
 2f36(A) : ************************************************************************************************************************ 
         :                                                                                                                          
 3qlv(A) : SSLRMAAILDDQTVCGRGERLALALAREQINGIIEkARVEVDIFELQRDSQYETTDTMCQILPKGVVSVLGPSSSPASASTVSHICGEKEIPHIKVGPEETPlRFASVSLYPSNEDVSLA 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2f36(A) : ***************************************************************************TLIVTTILEEPYVMYRKSDKPLYGNDRFEGYC-LDLLKELSNILG 
         :                                                                                                                          
 3qlv(A) : VSRILKSFNYPSASLICAKAECLLRLEELVRGFLISKETLSVRMLDDSRDPTPLLKEIRDDKVSTIIIDANASISHLVLRKASELGMTSAFYKYILTTMDFPILHLDGIVEDSSNILGFS 
           ________________________________________________________________________________________________________________________ 

           ______________________________________88_________100_____________________________________140____________________________ 
 2f36(A) : FLYDVKLVPDGKYGAQNDKGEWNGMVKELIDHRADLAVAPLTITYVREKVIDFSKPFMTLGISILYRKGTPIDSADDLAKQTKIEYGAVRDGSTMTFFKKSKISTYEKMWAFMSSRQQSA 
         :                                                                                                                          
 3qlv(A) : MFNTSHPFYPEFVRSLNMSWRENCEASTYPGPALSAALMFDAVHVVVSAVRELNRSQEIGVKPLACTSANIWPHGTSLMNYLRMVEYDGLTGRVEFNSKGQRTNYTLRILEKSRQ--GHR 
           _____________________________________289_________301_____________________________________341____________________________ 

           __________________________________________________________________________________________                               
 2f36(A) : LVKNSDEGIQRVLTTDYALLMESTSIEYVTQRNCNLTQIGGLIDSKGYGVGTPIGSPYRDKITIAILQLQEEGKLHMMKEKWWRGNGCPS                               
         :                                                                                                                          
 3qlv(A) : EIGVWYSN---RTLAM**************************************************************************                               
           __________________________________________________________________________________________                               

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		145.6
Translation
(A) 		-5.3
Closure
(%) 		98.9
Bending Residues
( green ) 		  88 - 89
  100 - 135
  140 - 146
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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