Glycine Receptor Subunit Alphaz1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glycine Receptor Subunit Alphaz1
  Conformer 1
(PDB) 		3jaf (A)
  Conformer 2
(PDB) 		3jad (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 201 1.46   34 - 159   166 - 233   285 - 291
2 124 1.08   160 - 165   234 - 284   292 - 361

Sequence


           ________________________________________________________________________________________________________________________ 
 3jaf(A) : APSEFLDKLMGKVSGYDARIRPNFKGPPVNVTCNIFINSFGSIAETTMDYRVNIFLRQQWNDPRLAYSEYPDDSLDLDPSMLDSIWKPDLFFANEKGANFHEVTTDNKLLRISKNGNVLY 
         :                                                                                                                          
 3jad(A) : APSEFLDKLMGKVSGYDARIRPNFKGPPVNVTCNIFINSFGSIAETTMDYRVNIFLRQQWNDPRLAYSEYPDDSLDLDPSMLDSIWKPDLFFANEKGANFHEVTTDNKLLRISKNGNVLY 
           ________________________________________________________________________________________________________________________ 

           ___________158____165_________________________________________________________________233_______________________________ 
 3jaf(A) : SIRITLVLACPMDLKNFPMDVQTCIMQLESFGYTMNDLIFEWDEKGAVQVADGLTLPQFILKEEKDLRYCTKHYNTGKFTCIEARFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDA 
         :                                                                                                                          
 3jad(A) : SIRITLVLACPMDLKNFPMDVQTCIMQLESFGYTMNDLIFEWDEKGAVQVADGLTLPQFILKEEKDLRYCTKHYNTGKFTCIEARFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDA 
           ___________158____165_________________________________________________________________233_______________________________ 

           _________________284_288______________________________________________________________________________                   
 3jaf(A) : APARVGLGITTVLTMTTQSSGSRASLPKVSYVKAIDIWMAVCLLFVFSALLEYAAVNFIARAGTKLFISRAKRIDTVSRVAFPLVFLIFNIFYWITYKLVPR                   
         :                                                                                                                          
 3jad(A) : APARVGLGITTVLTMTTQSSGSRASLPKVSYVKAIDIWMAVCLLFVFSALLEYAAVNFIAR---kLFISRAKRIDTVSRVAFPLVFLIFNIFYWITYKLV**                   
           _________________284_288______________________________________________________________________________                   

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		20.2
Translation
(A) 		-1.1
Closure
(%) 		32.5
Bending Residues
( green ) 		  158 - 160
  165 - 167
  233 - 236
  284 - 285
  288 - 294
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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