Gyrb

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Gyrb
  Conformer 1
(PDB) 		4prv (A)
  Conformer 2
(PDB) 		4pu9 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 209 0.31   7 - 22   27 - 191   193 - 220
2 142 0.48   23 - 26   192 - 192   221 - 370

Sequence


           _________________22__26_________________________________________________________________________________________________ 
 4prv(A) : *YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVV 
         :                                                                                                                          
 4pu9(A) : SYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVV 
           _________________22__26_________________________________________________________________________________________________ 

           _________________________________________________________________191__________________________220_______________________ 
 4prv(A) : NALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYF 
         :                                                                                                                          
 4pu9(A) : NALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYF 
           _________________________________________________________________191__________________________220_______________________ 

           ________________________________________________________________________________________________________________________ 
 4prv(A) : STEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGY--rEGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGK 
         :                                                                                                                          
 4pu9(A) : STEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKrEGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGK 
           ________________________________________________________________________________________________________________________ 

           ______________                                                                                                           
 4prv(A) : IIDAARAREAAR**                                                                                                           
         :                                                                                                                          
 4pu9(A) : IIDAARAREAARRA                                                                                                           
           ______________                                                                                                           

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		3.9
Translation
(A) 		0.0
Closure
(%) 		48.6
Bending Residues
( green ) 		  22 - 23
  26 - 27
  191 - 193
  220 - 221
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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