DynDom - Protein Domain Motions

Histidinol-Phosphate Aminotransferase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Histidinol-Phosphate Aminotransferase
Conformer 1 (PDB)	3cq5 (A)
Conformer 2 (PDB)	3cq6 (A)
Window Length	5
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	285	0.26	7 - 25 34 - 279 302 - 312 318 - 320 334 - 336 341 - 344
2	72	0.22	26 - 33 280 - 301 313 - 317 321 - 333 337 - 340 345 - 364

Sequence

`_____________________25______33_________________________________________________________________________________________` `3cq5(A) : KITLSDLPLREELRGEHAYGAPQLNVDIRLNTNENPYPPSEALVADLVATVDKIATELNRYPERDAVELRDELAAYITKQTGVAVTRDNLWAANGSNEILQQLLQAFGGPGRTALGFQPS` `:` `3cq6(A) : KITLSDLPLREELRGEHAYGAPQLNVDIRLNTNENPYPPSEALVADLVATVDKIATELNRYPERDAVELRDELAAYITKQTGVAVTRDNLWAANGSNEILQQLLQAFGGPGRTALGFQPS` `_____________________25______33_________________________________________________________________________________________` `________________________________________________________________________________________________________________________` `3cq5(A) : YSMHPILAKGTHTEFIAVSRGADFRIDMDVALEEIRAKQPDIVFVTTPNNPTGDVTSLDDVERIINVAPGIVIVDEAYAEFSPSPSATTLLEKYPTKLVVSRTMSKAFDFAGGRLGYFVA` `:` `3cq6(A) : YSMHPILAKGTHTEFIAVSRGADFRIDMDVALEEIRAKQPDIVFVTTPNNPTGDVTSLDDVERIINVAPGIVIVDEAYAEFSPSPSATTLLEKYPTKLVVSRTMS-aFDFAGGRLGYFVA` `________________________________________________________________________________________________________________________` `__________________________________279___________________301________312__317_____________333____340_344__________________` `3cq5(A) : NPAFIDAVMLVRLPYHLSALSQAAAIVALRHSADTLGTVEKLSVERVRVAARLEELGYAVVPSESNFVFFGDFSDQHAAWQAFLDRGVLIRDVGIAGHLRTTIGVPEENDAFLDAAAEII` `:` `3cq6(A) : NPAFIDAVMLVRLPYHLSALSQAAAIVALRHSADTLGTVEKLSVERVRVAARLEELGYAVVPSESNFVFFGDFSDQHAAWQAFLDRGVLIRDVGIAGHLRTTIGVPEENDAFLDAAAEII` `__________________________________279___________________301________312__317_____________333____340_344__________________` `____` `3cq5(A) : KLNL` `:` `3cq6(A) : KLNL` `____`

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	2.7
Translation (A)	0.1
Closure (%)	18.1
Bending Residues ( green )	25 - 27 33 - 34 279 - 280 301 - 302 312 - 313 317 - 318 320 - 321 333 - 334 336 - 337 340 - 341 344 - 345
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

Download and extract PyMOL PML script file