Iron-Uptake System-Binding Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Iron-Uptake System-Binding Protein
  Conformer 1
(PDB) 		2why (A)
  Conformer 2
(PDB) 		2wi8 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 139 0.93   158 - 276   278 - 297
2 138 0.65   21 - 157   277 - 277

Sequence


           ________________________________________________________________________________________________________________________ 
 2why(A) : **KKKIEYLDKTYEVTVPTDKIAITGSVESMEDAKLLDVHPQGAISFSGKFPDMFKDITDKAEPTGEKMEPNIEKILEMKPDVILASTKFPEKTLQKISTAGTTIPVSHISSNWKENMML 
         :                                                                                                                          
 2wi8(A) : SEKKKIEYLDKTYEVTVPTDKIAITGSVESMEDAKLLDVHPQGAISFSGKFPDMFKDITDKAEPTGEKMEPNIEKILEMKPDVILASTKFPEKTLQKISTAGTTIPVSHISSNWKENMML 
           ________________________________________________________________________________________________________________________ 

           ________147_____________________________________________________________________________________________________________ 
 2why(A) : LAQLTGKEKKAKKIIADYEQDLKETKTKINDKAKDSKALVIRIRQGNIYIYPEQVYFNSTLYGDLGLKAPNEVKAAKAQELISLEKLSEMNPDHIFVQFSDDENADKPDALKDLEKNPIW 
         :                                                                                                                          
 2wi8(A) : LAQLTGKEKKAKKIIADYEQDLKETKTKINDKAKDSKALVIRIRQGNIYIYPEQVYFNSTLYGDLGLKAPNEVKAAKAQELISLEKLSEMNPDHIFVQFSDDENADKPDALKDLEKNPIW 
           ________147_____________________________________________________________________________________________________________ 

           _________________276_________________________                                                                            
 2why(A) : KSLKAVKEDHVYVNSVDPLAQGGTAWSKVRFLKAAAEKLTQNKLA                                                                            
         :                                                                                                                          
 2wi8(A) : KSLKAVKEDHVYVNSVDPLAQGGTAWSKVRFLKAAAEKLTQNK**                                                                            
           _________________276_________________________                                                                            

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		19.4
Translation
(A) 		0.1
Closure
(%) 		59.9
Bending Residues
( green ) 		  147 - 159
  276 - 278
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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