Kinesin-Like Protein Kif11

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Kinesin-Like Protein Kif11
  Conformer 1
(PDB) 		1q0b (A)
  Conformer 2
(PDB) 		1ii6 (A)
  Window Length 11
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 288 2.23   21 - 181   185 - 292   323 - 357
2 33 0.96   182 - 184   293 - 322

Sequence


           ________________________________________________________________________________________________________________________ 
 1q0b(A) : GKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGI 
         :                                                                                                                          
 1ii6(A) : GKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGI 
           ________________________________________________________________________________________________________________________ 

           ___________________________________________181__________________________________________________________________________ 
 1q0b(A) : IPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEEL 
         :                                                                                                                          
 1ii6(A) : IPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEEL 
           ___________________________________________181__________________________________________________________________________ 

           ________________________292_________________________320_____________________________________________                     
 1q0b(A) : VKIGKLNLVDLAGSE------NiNQSLLTLGRVITALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNK***                     
         :                                                                                                                          
 1ii6(A) : VKIGKLNLVDLAGSErAREAGNINQSLLTLGRVITALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEV                     
           ________________________292_________________________320_____________________________________________                     

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		15.2
Translation
(A) 		0.4
Closure
(%) 		49.0
Bending Residues
( green ) 		  181 - 185
  292 - 293
  320 - 323
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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