Lipopolysaccharide Heptosyltransferase 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Lipopolysaccharide Heptosyltransferase 1
  Conformer 1
(PDB) 		2h1h (A)
  Conformer 2
(PDB) 		2gt1 (A)
  Window Length 9
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 239 0.34   5 - 37   39 - 56   80 - 182   195 - 220   226 - 276   288 - 295
2 24 0.3   38 - 38   57 - 79
3 50 0.37   183 - 194   221 - 225   277 - 287   296 - 317

Sequence


           ___________________________________37________________55______________________79_________________________________________ 
 2h1h(A) : MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIKFDWVVEEGFAQIPSWHAAVERVIPVAIRRWRKAWFSAPIKAERKAFREALQAKNYDAVIDAQGLVKSAALVTRLAHGVKHGMDWQTAR 
         :                                                                                                                          
 2gt1(A) : MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIKFDWVVEEGFAQIPSWHAAVERVIPVAIRRWRKAWFSAPIKAERKAFREALQAKNYDAVIDAQGLVKSAALVTRLAHGVKHGMDWQTAR 
           ___________________________________37________________55______________________79_________________________________________ 

           ___________________________________________________________182_________194__________________215_______225_______________ 
 2h1h(A) : EPLASLFYNRKHHIAKQQHAVERTRELFAKSLGYSKPQTQGDYAIAQHFLTNLPTDAGEYAVFLHATTRDDKHWPEEHWRELIGLLADSGIRIKLPWGAPHEEERAKRLAEGFAYVEVLP 
         :                                                                                                                          
 2gt1(A) : EPLASLFYNRKHHIAKQQHAVERTRELFAKSLGYSKPQTQGDYAIAQHFLTNLPTDAGEYAVFLHATTRDDKHWPEEHWRELIGLLADSGIRIKLPWGAPHEEERAKRLAEGFAYVEVLP 
           ___________________________________________________________182_________194__________________215_______225_______________ 

           _________________________________276________287____________________________________                                      
 2h1h(A) : KMSLEGVARVLAGAKFVVSVDTGLSHLTAALDRPNITVYGPTDPGLIGGYGKNQMVCRAPGNELSQLTANAVKQFIEENAEK*                                      
         :                                                                                                                          
 2gt1(A) : KMSLEGVARVLAGAKFVVSVDTGLSHLTAALDRPNITVYGPTDPGLIGGYGKNQMVCRAPGNELSQLTANAVKQFIEENAEKA                                      
           _________________________________276________287____________________________________                                      

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		6.4
Translation
(A) 		-0.1
Closure
(%) 		31.2
Bending Residues
( green ) 		  37 - 39
  55 - 57
  79 - 80
Bending Region Analysis
Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( yellow ) 		3
Rotation Angle
(deg) 		2.4
Translation
(A) 		0.5
Closure
(%) 		18.8
Bending Residues
( green ) 		  182 - 183
  194 - 195
  215 - 223
  225 - 228
  276 - 277
  287 - 288
  290 - 297
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Shear

PyMOL Script

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