DynDom - Protein Domain Motions

Luciferin 4-Monooxygenase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Luciferin 4-Monooxygenase
Conformer 1 (PDB)	4g36 (A)
Conformer 2 (PDB)	4g37 (A)
Window Length	5
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	429	0.86	6 - 439
2	87	0.68	440 - 539

Sequence

`________________________________________________________________________________________________________________________` `4g36(A) : AKNIKKGPAPFYPLEDGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQP` `:` `4g37(A) : AKNIKKGPAPFYPLEDGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVSSENSLQFFMPVLGALFIGVAVAPANDCYNERELLNSMNISQP` `________________________________________________________________________________________________________________________` `________________________________________________________________________________________________________________________` `4g36(A) : TVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSlPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFG` `:` `4g37(A) : TVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSpKGVALPHRALAVRFSHARDPIFGNQIAPDTAILSVVPFHHGFG` `________________________________________________________________________________________________________________________` `________________________________________________________________________________________________________________________` `4g36(A) : MFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPF` `:` `4g37(A) : MFTTLGYLISGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFLAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPKGDDKPGAVGKVVPF` `________________________________________________________________________________________________________________________` `_________________________________________________________________436____________________________________________________` `4g36(A) : FEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILL------dAGVAGLPDDDAGELPAAVVVLE` `:` `4g37(A) : FEAKVVDLDTGKTLGVNQRGELSVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGCQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLE` `_________________________________________________________________436____________________________________________________` `_______________________________________________________` `4g36(A) :` `-----tEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREILIK**` `:` `4g37(A) :` `HGKTMTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGL--kLDARKIREILIKAK` `_______________________________________________________`

Morph

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Status: Initialising

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Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	153.8
Translation (A)	2.8
Closure (%)	44.5
Bending Residues ( green )	436 - 441
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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