Lysozyme (E.C.3.2.1.17)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Lysozyme (E.C.3.2.1.17)
  Conformer 1
(PDB) 		1l96  
  Conformer 2
(PDB) 		1l97 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 95 0.75   3 - 11   75 - 160
2 63 0.53   12 - 74

Sequence


           __3___________________________________________________________________72________________________________________________ 
 1l96    : MNPFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRM 
         :                                                                                                                          
 1l97(A) : MNPFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRM 
           __3___________________________________________________________________72________________________________________________ 

           ____________________________________________                                                                             
 1l96    : LQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYK**                                                                             
         :                                                                                                                          
 1l97(A) : LQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYKNL                                                                             
           ____________________________________________                                                                             

Morph
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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		31.0
Translation
(A) 		-1.4
Closure
(%) 		66.4
Bending Residues
( green ) 		  3 - 13
  72 - 79
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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