Lysozyme

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Lysozyme
  Conformer 1
(PDB) 		1jse  
  Conformer 2
(PDB) 		1lzy  
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 100 0.17   4 - 23   25 - 97   99 - 105
2 20 0.19   24 - 24   98 - 98   106 - 123

Sequence


           _____________________23________________________________________________________________________97_____105_______________ 
 1jse    : KVYGRCELAAAMKRLGLDNYRGYSLGNWVCAAKFESNFNTHATNRNTDGSTDYGILQINSRWWCNDGRTPGSKNLCNIPCSALLSSDITASVNCAKKIASGGNGMNAWVAWRNRCKGTDV 
         :                                                                                                                          
 1lzy    : KVYGRCELAAAMKRLGLDNYRGYSLGNWVCAAKFESNFNTHATNRNTDGSTDYGILQINSRWWCNDGRTPGSKNLCNIPCSALLSSDITASVNCAKKIASGGNGMNAWVAWRNRCKGTDV 
           _____________________23________________________________________________________________________97_____105_______________ 

           _________                                                                                                                
 1jse    : HAWIRGCRL                                                                                                                
         :                                                                                                                          
 1lzy    : HAWIRGCRL                                                                                                                
           _________                                                                                                                

Morph
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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		2.2
Translation
(A) 		-0.1
Closure
(%) 		85.8
Bending Residues
( green ) 		  23 - 25
  97 - 99
  105 - 106
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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