Maltose-Binding Periplasmic Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Maltose-Binding Periplasmic Protein
  Conformer 1
(PDB) 		1nl5 (A)
  Conformer 2
(PDB) 		1peb (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 198 0.65   111 - 260   313 - 329   334 - 368
2 164 0.5   3 - 110   261 - 312   330 - 333

Sequence


           __________________________________________________________________________________________________________109___________ 
 1nl5(A) : KIEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKD 
         :                                                                                                                          
 1peb(A) : KIEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKD 
           __________________________________________________________________________________________________________109___________ 

           ________________________________________________________________________________________________________________________ 
 1nl5(A) : LLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYGDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGV 
         :                                                                                                                          
 1peb(A) : LLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYGDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGV 
           ________________________________________________________________________________________________________________________ 

           __________257_________________________________________________309______________326______________________________________ 
 1nl5(A) : TVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAATAENAAKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDEALKDA 
         :                                                                                                                          
 1peb(A) : TVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAATAENAAKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDEALKDA 
           __________257_________________________________________________309______________326______________________________________ 

           ______                                                                                                                   
 1nl5(A) : QTRITK                                                                                                                   
         :                                                                                                                          
 1peb(A) : QTRITK                                                                                                                   
           ______                                                                                                                   

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		39.1
Translation
(A) 		-0.5
Closure
(%) 		98.4
Bending Residues
( green ) 		  109 - 113
  257 - 261
  309 - 316
  326 - 334
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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