Maltose-Binding Periplasmic Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Maltose-Binding Periplasmic Protein
  Conformer 1
(PDB) 		4jkm (D)
  Conformer 2
(PDB) 		6lf3 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 195 3.76   183 - 377
2 132 8.05   20 - 35   67 - 182

Sequence


           ________________________________________________________________________________________________________________________ 
 4jkm(D) : *******IWINGDKAYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDL 
         :                                                                                                                          
 6lf3(A) : IEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPAAAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDL 
           ________________________________________________________________________________________________________________________ 

           _________________________________________________182____________________________________________________________________ 
 4jkm(D) : LPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVN 
         :                                                                                                                          
 6lf3(A) : LPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYAAGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSAVN 
           _________________________________________________174____________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 4jkm(D) : YGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDEAL 
         :                                                                                                                          
 6lf3(A) : YGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDAAL 
           ________________________________________________________________________________________________________________________ 

           _________                                                                                                                
 4jkm(D) : KDAQTNSSS                                                                                                                
         :                                                                                                                          
 6lf3(A) : AAAQTNARE                                                                                                                
           _________                                                                                                                

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		179.7
Translation
(A) 		1.7
Closure
(%) 		100.0
Bending Residues
( green ) 		  182 - 184
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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