DynDom - Protein Domain Motions

Maltose-Binding Protein Male2

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Maltose-Binding Protein Male2
Conformer 1 (PDB)	6dtt (A)
Conformer 2 (PDB)	6dts (A)
Window Length	5
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	213	0.64	111 - 263 316 - 375
2	156	1.33	7 - 110 264 - 315

Sequence

`_______________________________________________________________________________________________________110______________` `6dtt(A) : TKLTIWCSEKQVDILQKLGEEFKAKYGIPVEVQYVDFGSIKSKFLTAAPQGQGADIIVGAHDWVGELAVNGLIEPIPNFSDLKNFYDTALKAFSYGGKLYGVPYAMEAVALIYNKDYVDS` `:` `6dts(A) : TKLTIWCSEKQVDILQKLGEEFKAKYGIPVEVQYVDFGSIKSKFLTAAPQGQGADIIVGAHDWVGELAVNGLIEPIPNFSDLKNFYDTALKAFSYGGKLYGVPYAMEAVALIYNKDYVDS` `_______________________________________________________________________________________________________110______________` `________________________________________________________________________________________________________________________` `6dtt(A) : VPKTMDELIEKAKQIDEEYGGEVRGFIYDVANFYFSAPFILGYGGYVFKETPQGLDVTDIGLANEGAVKGAKLIKRMIDEGVLTPGDNYGTMDSMFKEGLAAMIINGLWAIKSYKDAGIN` `:` `6dts(A) : VPKTMDELIEKAKQIDEEYGGEVRGFIYDVANFYFSAPFILGYGGYVFKETPQGLDVTDIGLANEGAVKGAKLIKRMIDEGVLTPGDNYGTMDSMFKEGLAAMIINGLWAIKSYKDAGIN` `________________________________________________________________________________________________________________________` `________________263______________________________________________312____________________________________________________` `6dtt(A) : YGVAPIPELEPGVPAKPFVGVQGFMINAKSPNKVIAMEFLTNFIARKETMYKIYLADPRLPARKDVLELVKDNPDVVAFTQSASMGTPMPNVPEMAPVWSAMGDALSIIINGQASVEDAL` `:` `6dts(A) : YGVAPIPELEPGVPAKPFVGVQGFMINAKSPNKVIAMEFLTNFIARKETMYKIYLADPRLPARKDVLELVKDNPDVVAFTQSASMGTPMPNVPEMAPVWSAMGDALSIIINGQASVEDAL` `________________263______________________________________________312____________________________________________________` `___________________` `6dtt(A) : KEAVEKIKAQIEK******` `:` `6dts(A) : KEAVEKIKAQIEKGSHHHH` `___________________`

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	51.2
Translation (A)	-0.5
Closure (%)	99.4
Bending Residues ( green )	110 - 112 263 - 264 312 - 324
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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