Maltose/maltodextrin Import Atp-Binding Protein Malk

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Maltose/maltodextrin Import Atp-Binding Protein Malk
  Conformer 1
(PDB) 		3rlf (A)
  Conformer 2
(PDB) 		3pv0 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 250 1.08   4 - 79   152 - 299   344 - 369
2 72 0.87   80 - 151
3 44 0.64   300 - 343

Sequence


           ____________________________________________________________________________79__________________________________________ 
 3rlf(A) : ASVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVL 
         :                                                                                                                          
 3pv0(A) : ASVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVL 
           ____________________________________________________________________________79__________________________________________ 

           ___________________________151__________________________________________________________________________________________ 
 3rlf(A) : QLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGFIGSPKMNF 
         :                                                                                                                          
 3pv0(A) : QLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGFIGSPKMNF 
           ___________________________151__________________________________________________________________________________________ 

           _______________________________________________________299_________________________________________343__________________ 
 3rlf(A) : LPVKVTATAIDQVQVELPMPNRQQVWLPVESRDVQVGANMSLGIRPEHLLPSDIADVILEGEVQVVEQLGNETQIHIQIPSIRQNLVYRQNDVVLVEEGATFAIGLPPERCHLFREDGTA 
         :                                                                                                                          
 3pv0(A) : LPVKVTATAIDQVQVELPMPNRQQVWLPVESRDVQVGANMSLGIRPEHLLPSDIADVILEGEVQVVEQLGNETQIHIQIPSIRQNLVYRQNDVVLVEEGATFAIGLPPERCHLFREDGTA 
           _______________________________________________________299_________________________________________343__________________ 

           ___________                                                                                                              
 3rlf(A) : CRRLHKEPGVA                                                                                                              
         :                                                                                                                          
 3pv0(A) : CRRLHKEPGV*                                                                                                              
           ___________                                                                                                              

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		14.7
Translation
(A) 		-0.5
Closure
(%) 		7.7
Bending Residues
( green ) 		  79 - 80
  151 - 153
Bending Region Analysis
Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( yellow ) 		3
Rotation Angle
(deg) 		10.4
Translation
(A) 		-0.1
Closure
(%) 		50.6
Bending Residues
( green ) 		  299 - 300
  343 - 345
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Shear

PyMOL Script

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