Maltose/maltodextrin Transport Atp-Binding Protein Malk

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Maltose/maltodextrin Transport Atp-Binding Protein Malk
  Conformer 1
(PDB) 		1q1e (A)
  Conformer 2
(PDB) 		1q1b (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 141 1.93   6 - 36   39 - 82   150 - 215
2 153 0.58   37 - 38   216 - 366
3 67 1.28   83 - 149

Sequence


           _______________________________36____________________________________________82_________________________________________ 
 1q1e(A) : VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQL 
         :                                                                                                                          
 1q1b(A) : VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQL 
           _______________________________36____________________________________________82_________________________________________ 

           _______________________149_______________________________________________________________215____________________________ 
 1q1e(A) : AHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGFIGSPKMNFLP 
         :                                                                                                                          
 1q1b(A) : AHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGFIGSPKMNFLP 
           _______________________149_______________________________________________________________215____________________________ 

           ________________________________________________________________________________________________________________________ 
 1q1e(A) : VKVTATAIDQVQVELPMPNRQQVWLPVESRDVQVGANMSLGIRPEHLLPSDIADVILEGEVQVVEQLGNETQIHIQIPSIRQNLVYRQNDVVLVEEGATFAIGLPPERCHLFREDGTACR 
         :                                                                                                                          
 1q1b(A) : VKVTATAIDQVQVELPMPNRQQVWLPVESRDVQVGANMSLGIRPEHLLPSDIADVILEGEVQVVEQLGNETQIHIQIPSIRQNLVYRQNDVVLVEEGATFAIGLPPERCHLFREDGTACR 
           ________________________________________________________________________________________________________________________ 

           _______                                                                                                                  
 1q1e(A) : RLHKEPG                                                                                                                  
         :                                                                                                                          
 1q1b(A) : RLHKEPG                                                                                                                  
           _______                                                                                                                  

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		12.1
Translation
(A) 		-0.6
Closure
(%) 		57.9
Bending Residues
( green ) 		  36 - 39
  215 - 216
Bending Region Analysis
Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( yellow ) 		3
Rotation Angle
(deg) 		24.7
Translation
(A) 		-2.2
Closure
(%) 		17.4
Bending Residues
( green ) 		  82 - 85
  149 - 150
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Mixed

PyMOL Script

Download and extract PyMOL PML script file Download