Maltose/maltodextrin Transport Atp-Binding Protein Malk

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Maltose/maltodextrin Transport Atp-Binding Protein Malk
  Conformer 1
(PDB) 		1q12 (A)
  Conformer 2
(PDB) 		1q1b (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 284 0.82   6 - 80   154 - 161   165 - 171   175 - 368
2 73 0.99   87 - 153   162 - 164   172 - 174

Sequence


           ___________________________________________________________________________80___________________________________________ 
 1q12(A) : VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQL 
         :                                                                                                                          
 1q1b(A) : VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQL 
           ___________________________________________________________________________80___________________________________________ 

           ___________________________153_____161_______171________________________________________________________________________ 
 1q12(A) : AHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGFIGSPKMNFLP 
         :                                                                                                                          
 1q1b(A) : AHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGFIGSPKMNFLP 
           ___________________________153_____161_______171________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1q12(A) : VKVTATAIDQVQVELPMPNRQQVWLPVESRDVQVGANMSLGIRPEHLLPSDIADVILEGEVQVVEQLGNETQIHIQIPSIRQNLVYRQNDVVLVEEGATFAIGLPPERCHLFREDGTACR 
         :                                                                                                                          
 1q1b(A) : VKVTATAIDQVQVELPMPNRQQVWLPVESRDVQVGANMSLGIRPEHLLPSDIADVILEGEVQVVEQLGNETQIHIQIPSIRQNLVYRQNDVVLVEEGATFAIGLPPERCHLFREDGTACR 
           ________________________________________________________________________________________________________________________ 

           _______                                                                                                                  
 1q12(A) : RLHKEPG                                                                                                                  
         :                                                                                                                          
 1q1b(A) : RLHKEPG                                                                                                                  
           _______                                                                                                                  

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		8.5
Translation
(A) 		-0.3
Closure
(%) 		97.8
Bending Residues
( green ) 		  80 - 87
  153 - 154
  161 - 162
  164 - 168
  171 - 172
  174 - 175
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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