Protein (Surface Antigen Psaa)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Protein (Surface Antigen Psaa)
  Conformer 1
(PDB) 		3zka (B)
  Conformer 2
(PDB) 		3zk7 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 194 0.3   34 - 189   204 - 204   209 - 210   212 - 218   222 - 226   230 - 231   278 - 298
2 80 0.28   190 - 203   205 - 208   211 - 211   219 - 221   227 - 229   232 - 277   299 - 307

Sequence


           ________________________________________________________________________________________________________________________ 
 3zka(B) : KLKVVATNSIIADITKNIAGDKIDLHSIVPIGQDPHEYEPLPEDVKKTSEADLIFYNGINLETGGNAWFTKLVENAKKTENKDYFAVSDGVDVIYLEGQNEKGKEDPHAWLNLENGIIFA 
         :                                                                                                                          
 3zk7(A) : KLKVVATNSIIADITKNIAGDKIDLHSIVPIGQDPHEYEPLPEDVKKTSEADLIFYNGINLETGGNAWFTKLVENAKKTENKDYFAVSDGVDVIYLEGQNEKGKEDPHAWLNLENGIIFA 
           ________________________________________________________________________________________________________________________ 

           ___________________________________189___________203__208_______218___224_______________________________________________ 
 3zka(B) : KNIAKQLSAKDPNNKEFYEKNLKEYTDKLDKLDKESKDKFNKIPAEKKLIVTSEGAFKYFSKAYGVPSAYIWEINTEEEGTPEQIKTLVEKLRQTKVPSLFVESSVDDRPMKTVSQDTNI 
         :                                                                                                                          
 3zk7(A) : KNIAKQLSAKDPNNKEFYEKNLKEYTDKLDKLDKESKDKFNKIPAEKKLIVTSEGAFKYFSKAYGVPSAYIWEINTEEEGTPEQIKTLVEKLRQTKVPSLFVESSVDDRPMKTVSQDTNI 
           ___________________________________189___________203__208_______218___224_______________________________________________ 

           ___277__________________298___________                                                                                   
 3zka(B) : PIYAQIFTNSIAEQGKEGDSYYSMMKYNLDKIAEGLAK                                                                                   
         :                                                                                                                          
 3zk7(A) : PIYAQIFTDSIAEQGKEGDSYYSMMKYNLDKIAEGLAK                                                                                   
           ___277__________________298___________                                                                                   

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		2.9
Translation
(A) 		-0.4
Closure
(%) 		90.2
Bending Residues
( green ) 		  189 - 190
  203 - 205
  208 - 212
  218 - 219
  221 - 222
  224 - 232
  277 - 278
  298 - 304
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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