Methylcitrate Synthase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Methylcitrate Synthase
  Conformer 1
(PDB) 		3hwk (A)
  Conformer 2
(PDB) 		3hwk (C)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 297 0.55   29 - 194   198 - 242   265 - 277   283 - 290   296 - 304   317 - 329   346 - 388
2 63 0.45   195 - 197   243 - 264   278 - 282   291 - 295   305 - 316   330 - 345

Sequence


           ________________________________________________________________________________________________________________________ 
 3hwk(A) : DIKKGLAGVVVDTTAISKVVPQTNSLTYRGYPVQDLAARCSFEQVAFLLWRGELPTDAELALFSQRERASRRVDRSMLSLLAKLPDNCHPMDVVRTAISYLGAEDPDEDDAAANRAKAMR 
         :                                                                                                                          
 3hwk(C) : DIKKGLAGVVVDTTAISKVVPQTNSLTYRGYPVQDLAARCSFEQVAFLLWRGELPTDAELALFSQRERASRRVDRSMLSLLAKLPDNCHPMDVVRTAISYLGAEDPDEDDAAANRAKAMR 
           ________________________________________________________________________________________________________________________ 

           _____________________________________________194_____________________________________________242___________________264__ 
 3hwk(A) : MMAVLPTIVAIDMRRRRGLPPIAPHSGLGYAQNFLHMCFGEVPETAVVSAFEQSMILYAEHGFNASTFAARVVTSTQSDIYSAVTGAIGALKGRLHGGANEAVMHDMIEIGDPANAREWL 
         :                                                                                                                          
 3hwk(C) : MMAVLPTIVAIDMRRRRGLPPIAPHSGLGYAQNFLHMCFGEVPETAVVSAFEQSMILYAEHGFNASTFAARVVTSTQSDIYSAVTGAIGALKGRLHGGANEAVMHDMIEIGDPANAREWL 
           _____________________________________________194_____________________________________________242___________________264__ 

           ________277__________290__295____302___________316________327_______________345_________________________________________ 
 3hwk(A) : RAKLARKEKIMGFGHRVYRHGDSRVPTMKRALERVGTVRDGQRWLDIYQVLAAEMASATGILPNLDFPTGPAYYLMGFDIASFTPIFVMSRITGWTAHIMEQATANALIRPLSAYCGHEQ 
         :                                                                                                                          
 3hwk(C) : RAKLARKEKIMGFGHRVYRHGDSRVPTMKRALERVGTVRDGQRWLDIYQVLAAEMASATGILPNLDFPTGPAYYLMGFDIASFTPIFVMSRITGWTAHIMEQATANALIRPLSAYCGHEQ 
           ________277__________290__295____302___________316________327_______________345_________________________________________ 

           ______                                                                                                                   
 3hwk(A) : RVLPGT                                                                                                                   
         :                                                                                                                          
 3hwk(C) : RVLP**                                                                                                                   
           ______                                                                                                                   

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		4.0
Translation
(A) 		0.2
Closure
(%) 		54.2
Bending Residues
( green ) 		  194 - 195
  197 - 198
  242 - 245
  264 - 268
  277 - 288
  290 - 291
  295 - 296
  302 - 305
  316 - 317
  327 - 330
  345 - 346
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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