Mhc Class I H-2dd Heavy Chain

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Mhc Class I H-2dd Heavy Chain
  Conformer 1
(PDB) 		1ddh (A)
  Conformer 2
(PDB) 		2mha (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 176 0.99   4 - 179
2 89 1.18   180 - 268

Sequence


           ________________________________________________________________________________________________________________________ 
 1ddh(A) : MSHSLRYFVTAVSRPGFGEPRYMEVGYVDNTEFVRFDSDAENPRYEPRARWIEQEGPEYWERETRRANGNEQSFRVDLRTALRYYNQSAGGSHTLQWMAGCDVESDGRLLRGYWQFAYDG 
         :                                                                                                                          
 2mha(A) : GPHSLRYFVTAVSRPGLGEPRYMEVGYVDDTEFVRFDSDAENPRYEPRARWMEQEGPEYWERETQKAKGNEQSFRVDLRTLLGYYNQSKGGSHTIQVISGCEVGSDGRLLRGYQQYAYDG 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________179_____________________________________________________________ 
 1ddh(A) : CDYIALNEDLKTWTAADMAAQITRRKWEQAGAAERDRAYLEGECVEWLRRYLKNGNATLLATDPPKAHVTHHRRPEGDVTLRCWALGFYPAEITLTWQLNGEELTQEMELVETRPAGDGT 
         :                                                                                                                          
 2mha(A) : CDYIALNEDLKTWTAADMAALITKHKWEQAGEAERLRAYLEGTCVEWLRRYLKNGNATLLRTDSPKAHVTHHSRPEDKVTLRCWALGFYPADITLTWQLNGEELIQDMELVETRPAGDGT 
           ________________________________________________________179_____________________________________________________________ 

           __________________________________                                                                                       
 1ddh(A) : FQKWASVVVPLGKQQKYTCHVEHEGLPEPLTLRW                                                                                       
         :                                                                                                                          
 2mha(A) : FQKWASVVVPLGKEQYYTCHVYHQGLPEPL****                                                                                       
           __________________________________                                                                                       

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		23.0
Translation
(A) 		2.9
Closure
(%) 		71.6
Bending Residues
( green ) 		  179 - 182
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

Download and extract PyMOL PML script file Download