Mhc Class I H-2dd Heavy Chain

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Mhc Class I H-2dd Heavy Chain
  Conformer 1
(PDB) 		1ddh (A)
  Conformer 2
(PDB) 		1bii (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 170 0.64   4 - 173
2 99 0.85   174 - 272

Sequence


           ________________________________________________________________________________________________________________________ 
 1ddh(A) : MSHSLRYFVTAVSRPGFGEPRYMEVGYVDNTEFVRFDSDAENPRYEPRARWIEQEGPEYWERETRRANGNEQSFRVDLRTALRYYNQSAGGSHTLQWMAGCDVESDGRLLRGYWQFAYDG 
         :                                                                                                                          
 1bii(A) : GSHSLRYFVTAVSRPGFGEPRYMEVGYVDNTEFVRFDSDAENPRYEPRARWIEQEGPEYWERETRRAKGNEQSFRVDLRTALRYYNQSAGGSHTLQWMAGCDVESDGRLLRGYWQFAYDG 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________171_____________________________________________________________________ 
 1ddh(A) : CDYIALNEDLKTWTAADMAAQITRRKWEQAGAAERDRAYLEGECVEWLRRYLKNGNATLLATDPPKAHVTHHRRPEGDVTLRCWALGFYPAEITLTWQLNGEELTQEMELVETRPAGDGT 
         :                                                                                                                          
 1bii(A) : CDYIALNEDLKTWTAADMAAQITRRKWEQAGAAERDRAYLEGECVEWLRRYLKNGNATLLRTDPPKAHVTHHRRPEGDVTLRCWALGFYPADITLTWQLNGEELTQEMELVETRPAGDGT 
           ________________________________________________171_____________________________________________________________________ 

           __________________________________                                                                                       
 1ddh(A) : FQKWASVVVPLGKQQKYTCHVEHEGLPEPLTLRW                                                                                       
         :                                                                                                                          
 1bii(A) : FQKWASVVVPLGKEQKYTCHVEHEGLPEPLTLRW                                                                                       
           __________________________________                                                                                       

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		10.2
Translation
(A) 		0.3
Closure
(%) 		69.1
Bending Residues
( green ) 		  171 - 174
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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