Chaperone Protein Dnak

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Chaperone Protein Dnak
  Conformer 1
(PDB) 		1dkg (D)
  Conformer 2
(PDB) 		3hsc (A)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 307 1.87   6 - 237   270 - 278   305 - 305   309 - 380
2 57 1.88   238 - 269   279 - 304   306 - 308

Sequence


           ________________________________________________________________________________________________________________________ 
 1dkg(D) : **KIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNG--DAWVEVKGQKMA--PPQIS 
         :                                                                                                                          
 3hsc(A) : KGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVN-DAGRPKVQVEYKGETKSFYPEEVS 
           ________________________________________________________________________________________________________________________ 

           ___________________________________________________________________________________________________________________237__ 
 1dkg(D) : AEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDKt--GNRTIAVYDLGGGTFDISIIEIDEkTFEVLATNGDTHLGGEDFDSRLINY 
         :                                                                                                                          
 3hsc(A) : SMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGAERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNH 
           ___________________________________________________________________________________________________________________238__ 

           ___________________________269______278_______________________304_308___________________________________________________ 
 1dkg(D) : LVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFF-G 
         :                                                                                                                          
 3hsc(A) : FIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGI----DFYTSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNG 
           ___________________________270______279_______________________301_305___________________________________________________ 

           ____________________________                                                                                             
 1dkg(D) : KEPRKDVNPDEAVAIGAAVQGGVLT***                                                                                             
         :                                                                                                                          
 3hsc(A) : KELNKSINPDEAVAYGAAVQAAILSGDK                                                                                             
           ____________________________                                                                                             

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		17.6
Translation
(A) 		1.0
Closure
(%) 		89.4
Bending Residues
( green ) 		  237 - 238
  269 - 270
  278 - 279
  304 - 306
  308 - 309
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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