Nad Dependent Epimerase/dehydratase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Nad Dependent Epimerase/dehydratase
  Conformer 1
(PDB) 		3wmx (A)
  Conformer 2
(PDB) 		3wmw (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 232 0.51   11 - 20   22 - 22   73 - 75   91 - 311
2 36 0.81   8 - 10   21 - 21   23 - 72   76 - 77

Sequence


           _____10____________________________________________________________72_75________________________________________________ 
 3wmx(A) : GKPKILIVGANGQIGSELALALAERYGRTNVITSDVVPTGRHVHLTHEMLNATDRGELATVVERHGITQVYLLAAALSATGEKAPQWAWNLNMTSLLNVLELARQTGLERVFWPSSIAAF 
         :                                                                                                                          
 3wmw(A) : *KPKILIVG---qIGSELALALAERYGRTNVITSD--------------------gELATVVERHGITQVYLLAa---------PQWAWNLNMTSLLNVLELARQTGLERVFWPSSIAAF 
           _____10____________________________________________________________72_75________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 3wmx(A) : GPTTPAGQTPQKTVMEPTTVYGISKQAGEGWCRWYHANHGVDVRSVRYPGLISHKTPPGGGTTDYAVDIFHAAVTGEPYTCFLKEDEALPMMYMPDAIRATIELMEAPADKLSERGSYNI 
         :                                                                                                                          
 3wmw(A) : GPTTPAGQTPQKTVMEPTTVYGISKQAGEGWCRWYHANHGVDVRSVRYPGLISHKTPPGGGTTDYAVDIFHAAVTGEPYTCFLKEDEALPMMYMPDAIRATIELMEAPADKLSERGSYNI 
           ________________________________________________________________________________________________________________________ 

           ______________________________________________________________________                                                   
 3wmx(A) : AGMSFTPAQIAAAIREQVPGFQIRYEPDYRQAIAQGWPDSIDDSVARADWGWKAQYGLKEMVADMLANLK                                                   
         :                                                                                                                          
 3wmw(A) : AGMSFTPAQIAAAIREQVPGFQIRYEPDYRQAIAQGWPDSIDDSVARADWGWKAQYGLKEMVADMLANLK                                                   
           ______________________________________________________________________                                                   

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		9.8
Translation
(A) 		0.1
Closure
(%) 		54.2
Bending Residues
( green ) 		  10 - 24
  72 - 73
  75 - 94
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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