Ndp-N-Acetyl-D-Galactosaminuronic Acid Dehydrogenase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Ndp-N-Acetyl-D-Galactosaminuronic Acid Dehydrogenase
  Conformer 1
(PDB) 		3g79 (A)
  Conformer 2
(PDB) 		3g79 (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 234 0.51   227 - 227   230 - 297   312 - 476
2 229 0.87   6 - 226   228 - 229   298 - 303

Sequence


           ________________________________________________________________________________________________________________________ 
 3g79(A) : SMSKLEKLLKERGPIKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFECTPDFSRISELDAVTLAIQTPFANPKDLEPDF 
         :                                                                                                                          
 3g79(B) : SMSKLEKLLKERGPIKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFECTPDFSRISELDAVTLAIQTPFANPKDLEPDF 
           ________________________________________________________________________________________________________________________ 

           ____________________________________________________________________________________________________226_________________ 
 3g79(A) : SALIDGIRNVGKYLKPGMLVVLESTITPGTTEGMAKQILEEESGLKAGEDFALAHAPERVMVGRLLKNIREHDRIVGGIDEASTKRAVELYSPVLTVGQVIPMSATAAEVTKTAENTFRD 
         :                                                                                                                          
 3g79(B) : SALIDGIRNVGKYLKPGMLVVLESTITPGTTEGMAKQILEEESGLKAGEDFALAHAPERVMVGRLLKNIREHDRIVGGIDEASTKRAVELYSPVLTVGQVIPMSATAAEVTKTAENTFRD 
           ____________________________________________________________________________________________________226_________________ 

           ___________________________________________________297___303____________________________________________________________ 
 3g79(A) : LQIAAINQLALYCEAMGINVYDVRTGVDSLKGEGITRAVLWPGAGVGGHCLTKDTYHLERGVKIGRGELDYPEGADSIYVLARKVNDFMPAHMYNLTVAALERLGKKMDGSKVAMLGWAF 
         :                                                                                                                          
 3g79(B) : LQIAAINQLALYCEAMGINVYDVRTGVDSLKGEGITRAVLWPGAGVGGHCLTKDTYHLERGVKIGRGELDYPEGADSIYVLARKVNDFMPAHMYNLTVAALERLGKKMDGSKVAMLGWAF 
           ___________________________________________________297___303____________________________________________________________ 

           ___________________________________________________________________________________________________________________      
 3g79(A) : IKDSDDARNTPSEPYRDLCLKAGASVMVHDPYVVNYPGVEISDNLEEVVRNADAIVVLAGHSAYSSLKADWAKKVSAKANPVIIDGRNVIEPDEFIGKGFVYKGIGREGHHHHHH      
         :                                                                                                                          
 3g79(B) : IKDSDDARNTPSEPYRDLCLKAGASVMVHDPYVVNYPGVEISDNLEEVVRNADAIVVLAGHSAYSSLKADWAKKVSAKANPVIIDGRNVIEPDEFIGKGFVYKGIGREGHHHHHH      
           ___________________________________________________________________________________________________________________      

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		5.8
Translation
(A) 		0.0
Closure
(%) 		60.3
Bending Residues
( green ) 		  226 - 230
  297 - 298
  303 - 321
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

Download and extract PyMOL PML script file Download