Nicotinamide Phosphoribosyltransferase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Nicotinamide Phosphoribosyltransferase
  Conformer 1
(PDB) 		2g95 (B)
  Conformer 2
(PDB) 		2g97 (B)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 351 0.91   12 - 174   176 - 242   314 - 328   335 - 335   342 - 346   352 - 364   371 - 372   374 - 375   378 - 480
2 98 0.89   175 - 175   243 - 313   329 - 334   336 - 341   347 - 351   365 - 370   373 - 373   376 - 377

Sequence


           ________________________________________________________________________________________________________________________ 
 2g95(B) : EFNILLATDSYKVTHYKQYPPNTSKVYSYFECREKKyEETVFYGLQYILNKYLKGKVVTKEKIQEAKEVYREHFQDDVFNERGWNYILEKYDGHLPIEVKAVPEGSVIPRGNVLFTVENT 
         :                                                                                                                          
 2g97(B) : *FNILLATDSYKVTHYKQYPPNTSKVYSYFECRE--yEETVFYGLQYILNKYLKGKVVTKEKIQEAKEVYREHFQDDVFNERGWNYILEKYDGHLPIEVKAVPEGSVIPRGNVLFTVENT 
           ________________________________________________________________________________________________________________________ 

           __________________________________174_________________________________________________________________242_______________ 
 2g95(B) : DPECYWLTNWIETILVQSWYPITVATNSREQKKILAKYLLETSGNLDGLEYKLHDFGYRGVSSQETAGIGASAHLVNFKGTDTVAGIALIKKYYGTKDPVPGYSVPAAEHSTITAWGKDH 
         :                                                                                                                          
 2g97(B) : DPECYWLTNWIETILVQSWYPITVATNSREQKKILAKYLLETSGNLDGLEYKLHDFGYRGVSSQETAGIGASAHLVNFKGTDTVAGIALIKKYYGTKDPVPGYSVPAAEHSTITAWGKDH 
           __________________________________174_________________________________________________________________242_______________ 

           __________________________________________________310_______________328___334____341__346__351__________364___370_______ 
 2g95(B) : EKDAFEHIVTQFSSVPVSVVSDSYDIYNACEKIWGEDLRHLIVSRSTEAPLIIRPDSGNPLDTVLKVLDILGKKFPVSENSKGYKLLPPYLRVIQGDGVDINTLQEIVEGMKQKKWSIEN 
         :                                                                                                                          
 2g97(B) : EKDAFEHIVTQFSSVPVSVVSDSYDIYNACEKIWGEDLRHLIVSRSTEAPLIIRPDSGNPLDTVLKVLDILGKKFPVSENSKGYKLLPPYLRVIQGDGVDINTLQEIVEGMKQKKWSIEN 
           __________________________________________________310_______________328___334____341__346__351__________364___370_______ 

           ____________________________________________________________________________________________________________             
 2g95(B) : VSFGSGGALLQKLTRDLLNCSFKCSYVVTNGLGVN--------pNKRSKKGRLSLHRTPAGTFVTLEEGKGDLEEYGHDLLHTVFKNGKVTKSYSFDEVRKNAQLNME             
         :                                                                                                                          
 2g97(B) : VSFGSGGALLQKLTRDLLNCSFKCSYVVTNGLGVNVFKDPVADPNKRSKKGRLSLHRTPAGTFVTLEEGKGDLEEYGHDLLHTVFKNGKVTKSYSFDEVRKNAQLN**             
           ____________________________________________________________________________________________________________             

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		9.6
Translation
(A) 		-0.4
Closure
(%) 		87.2
Bending Residues
( green ) 		  174 - 176
  242 - 243
  310 - 316
  328 - 329
  334 - 336
  341 - 342
  346 - 347
  351 - 352
  364 - 365
  370 - 378
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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