N-Methyl-D-Aspartate Receptor Subunit 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name N-Methyl-D-Aspartate Receptor Subunit 1
  Conformer 1
(PDB) 		1pbq (A)
  Conformer 2
(PDB) 		1pbq (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 154 0.32   7 - 144   247 - 283
2 106 0.44   145 - 246   284 - 287

Sequence


           ________________________________________________________________________________________________________________________ 
 1pbq(A) : RLKIVTIHQEPFVYVKPTMSDGTCKEEFTVNGDPVKKVICTGvPQCCYGFCIDLLIKLARTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLSGQADMIVAPLTINNERAQYIE 
         :                                                                                                                          
 1pbq(B) : RLKIVTIHQEPFVYVKPTMSDGTCKEEFTVNGDPVKKVICT--pQCCYGFCIDLLIKLARTMNFTYEVHLVADGKFGTQE-------kEWNGMMGELLSGQADMIVAPLTINNERAQYIE 
           ________________________________________________________________________________________________________________________ 

           _____144___________________________________________________________________________________________________246__________ 
 1pbq(A) : FSKPFKYQGLTILVKKGTRITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVELSTMYRHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCDLVTTGELFFRSGFGIGMRK 
         :                                                                                                                          
 1pbq(B) : FSKPFKYQGLTILVKKGTRITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVELSTMYRHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCDLVTTGELFFRSGFGIGMRK 
           _____144___________________________________________________________________________________________________246__________ 

           ________________________283________                                                                                      
 1pbq(A) : DSPWKQNVSLSILKSHENGFMEDLDKTWVRYQEC*                                                                                      
         :                                                                                                                          
 1pbq(B) : DSPWKQNVSLSILKSHENGFMEDLDKTWVRYQECD                                                                                      
           ________________________283________                                                                                      

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		5.6
Translation
(A) 		0.1
Closure
(%) 		0.5
Bending Residues
( green ) 		  144 - 145
  246 - 247
  283 - 286
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

Download and extract PyMOL PML script file Download