Oxyr

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Oxyr
  Conformer 1
(PDB) 		4x6g (A)
  Conformer 2
(PDB) 		4x6g (D)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 202 0.56   86 - 295
2 84 1.25   2 - 85

Sequence


           ___________________________________________________________________________________82___________________________________ 
 4x6g(A) : **HMTLTELRYIVTLAQEQHFGRAAERCHVSQPTLSVGVKKLEDELGVLIFERSKSAVRLTPVGEGIVAQAQKVLEQAQGIRELAQAGKNQLAAPLKVGAIYTIGPYLFPHLIPQLHRVA 
         :                                                                                                                          
 4x6g(D) : HHHMTLTELRYIVTLAQEQHFGRAAERCHVSQPTLSVGVKKLEDELGVLIFERSKSAVRLTPVGEGIVAQAQKVLEQAQGIRELAQAGKNQLAAPLKVGAIYTIGPYLFPHLIPQLHRVA 
           ___________________________________________________________________________________82___________________________________ 

           ________________________________________________________________________________________________________________________ 
 4x6g(A) : PQMPLYIEENFTHILRDKLRTGELDAIIIALPFQEADVLTKPLFDEPFYVLMPADHPWTAKASIDSELLNDKSLLLLGEGHDFRDQVLEACPTVRKGDENKHTTVESSSLETIRHMVASG 
         :                                                                                                                          
 4x6g(D) : PQMPLYIEENFTHILRDKLRTGELDAIIIALPFQEADVLTKPLFDEPFYVLMPADHPWTAKASIDSELLNDKSLLLLGEGHDFRDQVLEACPT--------hTTVESSSLETIRHMVASG 
           ________________________________________________________________________________________________________________________ 

           ______________________________________________________________________                                                   
 4x6g(A) : LGVSVLPFSAVDSHHYAPGVIEVRPFSAPVPFRTVAIAWRASFPRPRAIEVLADSIRLCS**********                                                   
         :                                                                                                                          
 4x6g(D) : LGVSVLPFSAVDSHHYAPGVIEVRPFSAPVPFRTVAIAWRASFPRPRAIEVLADSIRLCSVARPQTQEQP                                                   
           ______________________________________________________________________                                                   

Morph
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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		129.0
Translation
(A) 		-1.8
Closure
(%) 		87.7
Bending Residues
( green ) 		  82 - 87
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

Download and extract PyMOL PML script file Download