Phosphoglucosamine Mutase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Phosphoglucosamine Mutase
  Conformer 1
(PDB) 		3i3w (A)
  Conformer 2
(PDB) 		3pdk (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 352 2.34   5 - 368
2 71 2.29   369 - 441

Sequence


           ________________________________________________________________________________________________________________________ 
 3i3w(A) : KYFGTDGIRGEVANSTITVEFTQKLGNAVGSLINQK-NYPKFVIVGQDTRSSGGFLKFALVSGLNAAGIDVLDLGVVPTPVVAFtVKH-RAAAGFVITA-hNKFTDNGIKLFSSNGFKLD 
         :                                                                                                                          
 3pdk(B) : KYFGTDGVRG-VANKELTPELAFKIGRFGGYVLTKDTDRPK-VIIGRDTRISGHMLEGALVAGLLSTGAEVMRLGVISTPGVAYLTKALDAQAGVMISASHNPVQDNGIKFFGSDGFKLT 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 3i3w(A) : DALEEEVE---DiDGDFIYQPQ-FKFGSYKILANAIDEYIESIYSRFAKFVNYKG-KVVVDCAHGAASHNFEALLDKFGINYVSIASNPDGLNINVGCGATCVSNIKKAVKEQKADLGIS 
         :                                                                                                                          
 3pdk(B) : DEQEAEIEALLDKEVDELPRPTGTNLGQVSDYFEGGQKYLQYIKQTVEE--DFSGLHIALDCAHGATSSLAPYLFADLEADISTMGTSPNGMNINDGVGSTHPEVLAELVKEKGADIGLA 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 3i3w(A) : LDGDADRIIIVDENGQEIDGDGILNILAQYSDICGGT--NGIVGT-QtN-sYENHYRANKIPFIRSKVGDRYVLEDLVKYGYKIGGESSGHVINLNFGTTGDGLFTAIQLLAIFSQADKP 
         :                                                                                                                          
 3pdk(B) : FDGDGDRLIAVDEKGNIVDGDQIMFICAKYMKETGQLKHNTVVSTVMSNLGFYKALEANGITSDKTAVGDRYVMEEMKRGGYNLGGEQSGHIILLDYITTGDGMLSALQLVNIMKMTKKP 
           ________________________________________________________________________________________________________________________ 

           _________368_______________________________________________________________________________                              
 3i3w(A) : VSEFKLQGELq---QTLINVPLT-KKVAREDLQKVASDVNDVEKRLGNRGRVLLRPSGTEPVLRVv-EADDKSLATNEAEYLVEKVKQKLV                              
         :                                                                                                                          
 3pdk(B) : LSE--LAGEMTKFPQLLVNVRVTDKKLALEN-EKIKEIIRVVEEEMNGDGRILVRPSGTEPLIRVMAEAPTQEVCDAYVHRIVEVVKAEVG                              
           _________371_______________________________________________________________________________                              

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		53.2
Translation
(A) 		-1.6
Closure
(%) 		88.3
Bending Residues
( green ) 		  368 - 369
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

Download and extract PyMOL PML script file Download