Phosphate Binding Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Phosphate Binding Protein
  Conformer 1
(PDB) 		4omb (A)
  Conformer 2
(PDB) 		4pqj (A)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 153 0.39   45 - 124   184 - 190   208 - 209   211 - 221   228 - 235   267 - 311
2 98 0.54   125 - 183   191 - 207   210 - 210   222 - 227   236 - 266

Sequence


           _________________________________________________________________________________________________124____________________ 
 4omb(A) : AIDPALPEYQKASGVSGNLSSVGSDTLANLMTMWAEEYKRLYPNVNIQIQAAGSSTAPPALTEGTANLGPMSRKMKDVELQAFEQKYGYKPTAVPVAVDALAIFVHKDNPIKGLTMQQVD 
         :                                                                                                                          
 4pqj(A) : *************GVSGNLSSVGSDTLANLMTMWAEEYKRLYPNVNIQIQAAGSSTAPPALTEGTANLGPMSRKMKDVELQAFEQKYGYKPTAVPVAVDALAIFVHKDNPIKGLTMQQVD 
           _________________________________________________________________________________________________124____________________ 

           ____________________________________183____190______________207___________221___227___233______________________________2 
 4omb(A) : AIFSATRLCGSKQDVKTWGDLGLTGDWAKKPVQLFGRNSVSGTYGYFKEEALCKGDFRPNVNEQPGSASVVQSVSQSLNGIGYSGIGYKTASVKTVALAKKEGAAFVEDNEQNALNGTYP 
         :                                                                                                                          
 4pqj(A) : AIFSATRLCGSKQDVKTWGDLGLTGDWAKKPVQLFGRNSVSGTYGYFKEEALCKGDFRPNVNEQPGSASVVQSVSQSLNGIGYSGIGYKTASVKTVALAK----------------gTYP 
           ____________________________________183____190______________207___________221___227___233______________________________2 

           66_________________________________________________________                                                              
 4omb(A) : LSRFLYVYVNKAPNKPLDPLEAQFLKLVLSKTGQQVVVKDGYIPLPAKVAEKAIKELG*                                                              
         :                                                                                                                          
 4pqj(A) : LSRFLYVYVNKAPNKPLDPLEAQFLKLVLSKTGQQVVVKDGYIPLPAKVAEKAIKELGL                                                              
           66_________________________________________________________                                                              

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		5.1
Translation
(A) 		0.0
Closure
(%) 		2.5
Bending Residues
( green ) 		  124 - 125
  183 - 184
  190 - 191
  207 - 211
  221 - 222
  227 - 228
  233 - 236
  266 - 267
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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