Polymerase (Dna Directed) Kappa

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Polymerase (Dna Directed) Kappa
  Conformer 1
(PDB) 		1t94 (A)
  Conformer 2
(PDB) 		6cst (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 277 0.8   73 - 406
2 96 3.03   407 - 513

Sequence


           ________________________________________________________________________________________________________________________ 
 1t94(A) : *******************************************************KAQITSQQLRKAQLQVDRFAMELEQSRNLSNTIVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSM 
         :                                                                                                                          
 6cst(A) : LLRMGLNDNKAGMEGLDKEKINKIIMEATKGSRFYGNELKKEKQVNQRIENMMQQKAQITSQQLRKAQLQVDRFAMELEQSRNLSNTIVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSM 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1t94(A) : LSTSNYHARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNITKHLEERQNWPEDKRRYFIKMvENDNPGKEVNKLSEHERSISPLLFnPQIL 
         :                                                                                                                          
 6cst(A) : LSTSNYHARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNITKHLEERQNWPEDKRRYFIK------------------------------- 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1t94(A) : QNSVVFGTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPNRQAVMDFIKDLPIRKVSGIGKVTEKMLKALGIITCTELYQQRALLSLLFSETSWHYFLHISL 
         :                                                                                                                          
 6cst(A) : -nSVVFGTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPNRQAVMDFIKDLPIRKVSGIGKVTEKMLKALGIITCTELYQQRALLSLLFSETSWHYFLHISL 
           ________________________________________________________________________________________________________________________ 

           ___406________________________________________________________________________________________________________________   
 1t94(A) : GLGSTHLg-----kSMSVERTFSEINKAEEQYSLCQELCSELAQDLQ---lKGRTVTIKLKNVNFEVKTRAS-vSSVVST--eIFAIAKELLKTEIDADFPHPLRLRLMGVRISS***   
         :                                                                                                                          
 6cst(A) : GLGSTHLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVNFEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPN   
           ___406________________________________________________________________________________________________________________   

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		105.0
Translation
(A) 		2.5
Closure
(%) 		56.9
Bending Residues
( green ) 		  406 - 407
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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