Probable Aspartokinase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Probable Aspartokinase
  Conformer 1
(PDB)
2hmf (A)
  Conformer 2
(PDB)
3c1n (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 293 1.23   4 - 234   249 - 298   415 - 419   440 - 447
2 161 1.81   235 - 248   299 - 414   420 - 439   448 - 467

Sequence


           ________________________________________________________________________________________________________________________ 
 2hmf(A) : TTVMKFGGTSVGSGERIRHVAKIVTKRKKEDDDVVVVVSAMSEVTNALVEISQQALDVRDIAKVGDFIKFIREKHYKAIEEAIKSEEIKEEVKKIIDSRIEELEKVLIGVAYLGELTPKS 
         :                                                                                                                          
 3c1n(A) : TTVMKFGGTSVGSGERIRHVAKIVTKRKKEDDDVVVVVSAMSEVTNALVEISQQALDVRDIAKVGDFIKFIREKHYKAIEEAI-sEEIKEEVKKIIDSRIEELEKVLIGVAYLGELTPKS 
           ________________________________________________________________________________________________________________________ 

           ______________________________________________________________________________________________________________234_______ 
 2hmf(A) : RDYILSFGERLSSPILSGAIRDLGEKSIALEGGEAGIITDNNFGSARVKRLEVKERLLPLLKEGIIPVVTGFIGTTEEGYITTLGRGGSDYSAALIGYGLDADIIEIWTDVSGVYTTDPR 
         :                                                                                                                          
 3c1n(A) : RDYILSFGERLSSPILSGAIRDLGEKSIALEGGEAGIITDNNFGSARVKRLEVKERLLPLLKEGIIPVVTGFIGTTEEGYITTLGRGGSDYSAALIGYGLDADIIEIWTDVSGVYTTDPR 
           ______________________________________________________________________________________________________________234_______ 

           ____248_______________________________________________298_______________________________________________________________ 
 2hmf(A) : LVPTARRIPKLSYIEAMELAYFGAKVLHPRTIEPAMEKGIPILVKNTFEPESEGTLITNDMEMSDSIVKAISTIKNVALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGSSETNI 
         :                                                                                                                          
 3c1n(A) : LVPTARRIPKLSYIEAMELAYFGAKVLHPRTIEPAMEKGIPILVKNTFEPESEGTLITNDM---dSIVKAISTIKNVALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGSSETNI 
           ____248_______________________________________________298_______________________________________________________________ 

           _____________________________________________414__419_________________439____446________________________                 
 2hmf(A) : SLVVSEEDVDKALKALKREFGDfLNNNLIRDVSVDKDVCVISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQGSSEVNISFVIDEKDLLNCVRKLHEKFIEK                 
         :                                                                                                                          
 3c1n(A) : SLVVSEEDVDKALKALKREFGD-lNNNLIRDVSVDKDVCVISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQGSSEVNISFVIDEKDLLNCVRKLHEKFIE*                 
           _____________________________________________414__419_________________439____446________________________                 

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
17.7
Translation
(A)
1.3
Closure
(%)
46.2
Bending Residues
( green )
  234 - 235
  248 - 249
  298 - 299
  414 - 417
  419 - 420
  439 - 440
  446 - 448
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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