Probable Serine/threonine-Protein Kinase Pknb

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Probable Serine/threonine-Protein Kinase Pknb
  Conformer 1
(PDB) 		1mru (A)
  Conformer 2
(PDB) 		3f61 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 224 1.31   6 - 18   24 - 39   62 - 80   90 - 284
2 36 1.91   19 - 23   40 - 61   81 - 89

Sequence


           ________________18___23______________39____________________61_________________80_______89_______________________________ 
 1mru(A) : **TPSHLSDRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIA 
         :                                                                                                                          
 3f61(A) : MTTPSHLSDRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIA 
           ________________18___23______________39____________________61_________________80_______89_______________________________ 

           ________________________________________________________________________________________________________________________ 
 1mru(A) : DACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAItAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVREDPIPPSARHEGLSADLDAVVLKAL 
         :                                                                                                                          
 3f61(A) : DACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIA----aQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPDSVAYQHVREDPIPPSARHEGLSADLDAVVLKAL 
           ________________________________________________________________________________________________________________________ 

           ___________________________________                                                                                      
 1mru(A) : AKNPENRYQTAAEMRADLVRVHNGEPPEAPK****                                                                                      
         :                                                                                                                          
 3f61(A) : AKNPENRYQTAAEMRADLVRVHNGEPPEAPKVLTD                                                                                      
           ___________________________________                                                                                      

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		22.8
Translation
(A) 		1.3
Closure
(%) 		40.3
Bending Residues
( green ) 		  18 - 19
  23 - 24
  39 - 40
  61 - 66
  80 - 81
  89 - 90
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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