Protein (Arrestin)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Protein (Arrestin)
  Conformer 1
(PDB) 		1cf1 (A)
  Conformer 2
(PDB) 		4j2q (A)
  Window Length 15
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 172 2.91   179 - 353
2 154 2.24   17 - 178

Sequence


           ________________________________________________________________________________________________________________________ 
 1cf1(A) : HVIFKKISRDKSVTIYLGKRDYIDHVERVEPVDGVVLVDPELVKGKRVYVSLTCAFRYGQEDIDVMGLSFRRDLYFSQVQVFPPVGASGATTRLQESLIKKLGANTYPFLLTFPDYLPCS 
         :                                                                                                                          
 4j2q(A) : HVIFKKISRDKSVTIYLGKRDYIDHVERVEPVDGVVLVDPELVKGKRVYVSLTCAFRYGQEDID-mGLSFRRDLYFSQVQVFPPVGASGATTRLQESLIKKLGANTYPFLLTFPDYLPCS 
           ________________________________________________________________________________________________________________________ 

           ______________________________________________178_______________________________________________________________________ 
 1cf1(A) : VMLQPAPQDVGKSCGVDFEIKAFATHSTDVEEDKIPKKSSVRLLIRKVQHAPRDMGPQPRAEASWQFFMSDKPLRLAVSLSKEIYYHGEPIPVTVAVTNSTEKTVKKIKVLVEQVTNVVL 
         :                                                                                                                          
 4j2q(A) : VMLQPAPQDVGKSCGVDFEIKAFATH-------kIPKKSSVRLLIRKVQHAPRDMGPQPRAEASWQFFMSDKPLRLAVSLSKEIYYHGEPIPVTVAVTNSTEKTVKKIKVLVEQVTNVVL 
           ______________________________________________178_______________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1cf1(A) : YSSDYYIKTVAAEEAQEKVPPNSSLTKTLTLVPLLANNRERRGIALDGKIKHEDTNLASSTIIKEGIDKTVMGILVSYQIKVKLTVSGLLGELTSSEVATEVPFRLMHPQPEDnFVFEEF 
         :                                                                                                                          
 4j2q(A) : YSSDYYIKTVAAEEAQEKVPPNSSLTKTLTLVPLLANNRERRGIALDGKIKHEDTNLASSTIIKEGIDKTVMGILVSYQIKVKLTVSGLl---TSSEVATEVPFRLMHPQP********* 
           ________________________________________________________________________________________________________________________ 

           _____________                                                                                                            
 1cf1(A) : ARQNLKDAGEYKE                                                                                                            
         :                                                                                                                          
 4j2q(A) : *************                                                                                                            
           _____________                                                                                                            

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		20.1
Translation
(A) 		-1.9
Closure
(%) 		60.6
Bending Residues
( green ) 		  178 - 179
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download