DynDom - Protein Domain Motions

Protein-Glutamine Gamma-Glutamyltransferase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Protein-Glutamine Gamma-Glutamyltransferase
Conformer 1 (PDB)	1kv3 (A)
Conformer 2 (PDB)	3s3p (A)
Window Length	5
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	373	3.56	17 - 473
2	199	1.84	474 - 681

Sequence

`________________________________________________________________________________________________________________________` `1kv3(A) : ***********ETNGRDHHTADLCREKLVVRRGQPFWLTL------------sLTFSVVTGPAPSQEAGTKARFPLRDAVEEGDWTATVVDQQDCTLSLQLTTPANAPIGLYRLSLEA` `:` `3s3p(A) : AEELVLERCDLELETNGRDHHTADLCREKLVVRRGQPFWLTLHFEGRNYEASVDSLTFSVVTGPAPSQEAGTKARFPLRDAVEEGDWTATVVDQQDCTLSLQLTTPANAPIGLYRLSLEA` `________________________________________________________________________________________________________________________` `________________________________________________________________________________________________________________________` `1kv3(A) : S----------gHFILLFNAWCPADAVYLDSEEERQEYVLTQQGFIYQGSAKFIKNIPWNFGQFQDGILDICLILLDVNPKFLKNAGRDCSRRSSPVYVGRVGSGMVNCNDDQGVLLGRW` `:` `3s3p(A) : STGYQGSSFVLGHFILLFNAWCPADAVYLDSEEERQEYVLTQQGFIYQGSAKFIKNIPWNFGQFEDGILDICLILLDVNPKFLKNAGRDCSRRSSPVYVGRVVSGMVNCNDDQGVLLG--` `________________________________________________________________________________________________________________________` `________________________________________________________________________________________________________________________` `1kv3(A) :` `DNNYGDGVSPMSWIGSVDILRRWKNHGCQRVKYGQCWVFAAVACTVLRCLGIPTRVVTNYNSAHDQNSNLLIEYFRNEFGEIQGDKSEMIWNFHCWVESWMTRPDLQPGYEGWQALDPTP` `:` `3s3p(A) :` `-----------sWIGSVDILRRWKN----------cWVFAAVACTVLRCLGIPTRVVTNYNSA----sNLLIEYFR----------sEMIWNFHCWVESWMTRPDLQPGYEGWQALDPTP` `________________________________________________________________________________________________________________________` `_______________________________________________________________________________________________459______________________` `1kv3(A) :` `QEKSEGTYCCGPVPVRAIKEGDLSTKYDAPFVFAEVNADVVDWIQQDDGSVHKSINRSLIVGLKISTKSVGRDEREDITHTYKYPEGSSEEREAFTRANHLNKLAEKEETGMAMRIRVGQ` `:` `3s3p(A) :` `--------cCGPVPVRAIKEGDLSTKYDAPFVFAEVNADVVDWIQ-------kSINRSLIVGLKISTKSVGRDEREDITHTYKYPEGSSEEREAFTRANH----------gMAMRIRVGQ` `_______________________________________________________________________________________________459______________________` `________________________________________________________________________________________________________________________` `1kv3(A) : SMNMGSDFDVFAHITNNTAEEYVCRLLLCARTVSYNGILGPECGTKYLLNLTLEPFSEKSVPLCILYEKYRDCLTESNLIKVRALLVEPVINSYLLAERDLYLENPEIKIRILGEPKQKR` `:` `3s3p(A) : SMNMGSDFDVFAHITNNTAEEYVCRLLLCARTVSYNGILGPECGTKYLLNLNLEPFSEKSVPLCILYEKYRDCLTESNLIKVRALLVEPVINSYLLAERDLYLENPEIKIRI--------` `________________________________________________________________________________________________________________________` `______________________________________________________________________________________` `1kv3(A) :` `KLVAEVSLQNPLPVALEGCTFTVEGAGLTEEQKTVEIPDPVEAGEEVKVRMDLVPLHMGLHKLVVNFESDKLKAVKGFRNVIIGPA` `:` `3s3p(A) :` `-LvAEVSLQNPLPVALEGCTFTVEGAGLTEEQKTVEIPDPVEAGEEVKVRMDLLPLHMGLHKLVVNFESDKLKAVKGFRNVI**` `______________________________________________________________________________________`

Morph

Morph animation in progress.
Status: Initialising

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	161.2
Translation (A)	-2.7
Closure (%)	79.4
Bending Residues ( green )	459 - 474
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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